<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17989

Description Uncharacterized protein
SequenceMLARARRSEHDGEERTFLLLCSSLAAIPPARDWSMAIQEEGERAGSADAPLTVGLALGGSKSSTYVLQWALAKFASGKDKDENKSAPTFKLIHVLTPVLTVPTPLGNYPVDKVRPEIADTHAKEVQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQVLVVGNTTSRCAFTRKSSRNKTSSKICKSVPSSCTTYIVSKDGLSSVYSPGLGSDTSDSQVHSGEMSPRSDLNDSSGRTLLGLPSLPRSNLASENLKSSSSSKHDGSFTLYDYLSGSASVYADQDRTITSCTDGESSISSKVQASDKVPTQGSSLQALMLSDKVPTQKNSLQGLMLSDSKDDVNTELEKLRLELRHIQGTYKLVQDESVDASHQVVELAAMRVEGKAQLRDIQSRVDKANDEVQEDKAHRCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLRGNLYSTFTWEEIDNATSSFSESHKIGTGSNGTVYKGHLKHLDVAIKILHSDDSSSTKHFNQELDVLRRIRHPHLLMLLGALPDRGCLVYEYMENGSLADRLQCINGTQPIPWFHRFCIAWEIVSALVFLHSTKPNPIIHRDLKPENVLLDRNLVSKIGDVGLSTLVPLKDSSSSGTMYKNTGLAGTLFYIDPEYHRTGQVSVKSDTYALGMVILQLLTARSPIGLPELVERAVEDGQLMDVLDGSAGNWPAKEAYDLAHLGLSCLEMRSKDRPDLKNMVAVELERLKNIAGAASEPVPGPPSHFVCPILKEVMQDPCIAADGHTYERNAILMWLSKHELSPVTKALLPNKTLVSNHSLLSAISSWRSQGGGL
Length838
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.312
Instability index40.35
Isoelectric point6.11
Molecular weight91826.11
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17989
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     496.57|     149|     288|     110|     271|       1
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  110-  271 (224.16/183.86)	VDKVRPEIADTHAKevQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQvlvvGNTTSrcAFTRKSSRNKTSS.....KIckSVPSSCTTYivsKDGLS..SVYSPGLGSDTSDSQVH.SGEMSPRSDLNDSSGRTLLGLP.SLP.RSNLASENLKSSS
  301-  363 (51.39/25.08)	...................................................................................................SCT......DGES..SISSKVQASDKVPTQGS.SLQALMLSDKVPTQKNSLQGLMlSDS.KDDVNTELEKLRL
  407-  562 (221.01/147.18)	VDKANDEVQEDKAH..RCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLR....GNLYS..TFTWEEIDNATSSfseshKI..GTGSNGTVY...KGHLKhlDVAIKILHSDDSSSTKHfNQELDVLRRIRHPHLLMLLG...ALPdRGCLVYEYMENGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      12|     422|     276|     289|       3
---------------------------------------------------------------------------
  276-  289 (18.87/17.66)	DGSftLYDYLSGSA
  701-  712 (23.37/13.80)	DGQ..LMDVLDGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.50|      19|      34|      32|      50|       4
---------------------------------------------------------------------------
   32-   50 (33.28/22.90)	DWSMA.IQEEGERAGSADAP
   68-   87 (28.22/18.23)	QWALAkFASGKDKDENKSAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17989 with Med32 domain of Kingdom Viridiplantae
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