<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17988

Description Uncharacterized protein
SequenceMLARARRSEHDGEERTFLLLCSSLAAIPPARDWSMAIQEEGERAGSADAPLTVGLALGGSKSSTYVLQWALAKFASGKDKDENKSAPTFKLIHVLTPVLTVPTPLGNYPVDKVRPEIADTHAKEVQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQVLVVGNTTSRKSSRNKTSSKICKSVPSSCTTYIVSKDGLSSVYSPGLGSDTSDSQVHSGEMSPRSDLNDSSGRTLLGLPSLPRSNLASENLKSSSSSKHDGSFTLYDYLSGSASVYADQDRTITSCTDGESSISSKVQASDKVPTQGSSLQALMLSDKVPTQKNSLQGLMLSDSKDDVNTELEKLRLELRHIQGTYKLVQDESVDASHQVVELAAMRVEGKAQLRDIQSRVDKANDEVQEDKAHRCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLRGNLYSTFTWEEIDNATSSFSESHKIGTGSNGTVYKGHLKHLDVAIKILHSDDSSSTKHFNQELDVLRRIRHPHLLMLLGALPDRGCLVYEYMENGSLADRLQCINGTQPIPWFHRFCIAWEIVSALVFLHSTKPNPIIHRDLKPENVLLDRNLVSKIGDVGLSTLVPLKDSSSSGTMYKNTGLAGTLFYIDPEYHRTGQVSVKSDTYALGMVILQLLTARSPIGLPELVERAVEDGQLMDVLDGSAGNWPAKEAYDLAHLGLSCLEMRSKDRPDLKNMVAVELERLKNIAGAASEPVPGPPSHFVCPILKEVMQDPCIAADGHTYERNAILMWLSKHELSPVTKALLPNKTLVSNHSLLSAISSWRSQGGGL
Length833
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.316
Instability index40.54
Isoelectric point6.06
Molecular weight91247.42
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17988
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     521.19|     151|     289|     110|     266|       1
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  110-  266 (237.44/161.70)	VDKVRPEIADTHAKevQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQvlvvGN...TTSRKSSRNKTSS.KICKSVPSSC..TTY......IVS.KDGLS..SVYSPGLGSDTSDSQVH.SGEMSPRSDLNDSSGRTLLGLP.SLP.RSNLASENLKSSS
  267-  358 (79.13/42.73)	............................................................................SSKHDGSF.TLYDYLSGSA..SVYadqdrtITScTDGES..SISSKVQASDKVPTQGS.SLQALMLSDKVPTQKNSLQGLMlSDS.KDDVNTELEKLRL
  402-  557 (204.62/127.12)	VDKANDEVQEDKAH..RCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLR....GNlysTFTWEEIDNATSSfSESHKIGTGSngTVY..........KGHLKhlDVAIKILHSDDSSSTKHfNQELDVLRRIRHPHLLMLLG...ALPdRGCLVYEYMENGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.50|      19|      34|      32|      50|       3
---------------------------------------------------------------------------
   32-   50 (33.28/19.84)	DWSMA.IQEEGERAGSADAP
   68-   87 (28.22/15.81)	QWALAkFASGKDKDENKSAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17988 with Med32 domain of Kingdom Viridiplantae
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