<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17987

Description Uncharacterized protein
SequenceMAIQEEGEGAGSADAPLTVGLALGGSKSSTYVFRWALAKFANGKDKPAPIFKLIHVLTPVLAVPTPLGNYIPIDEVRPDIAEAYAKEVHVQAQEMLLPYRKMCDENKVEVEVLLVKGDDVADTISNLVTQYKIRVLVVGNPTSRSAFTRKSSGNKASSKICKSIPSFCTTYIVSKDGLSSVYSPGLGSETSSYLSDSSARTLLGLLSLPSSNLASENLKSSSSAERNRSFTLYDYISGSASVYADKDRRITSCTDSESSISSRLRASNKAPTQGSSLRGLMLSETKDDVNIELEKLRLELRHVQGAHKLVQDESADASRQASSVVVELAAKRVEGKAQLREIQSRVDKANDEVQEEKARRCATEEVVTHVKDLVRAEVMQKNRLLIKASKVADQKSRLEELFVLHGNSYSTFTWEEIDNATSSFSESRKIGAGSNGTVYKGHLNHLDVAIKVLHSDDRSSTKHFNQELEVLGRIRHPHLLMLLGACPDRGCLVYEYMENGSLADRLQCKNGTPSIPWFHRFRIAWEIVSALVFLHSTKPNPIIHRDLKPENVLLDRDLVSKIGDVGLSTLVPLKDSSSSGTMYKKTGLAGTMFYIDPEYHRTGQVSVKSDTYALGMVILQLLTARSPIGLPELVERAVEDDQLMDVLDEGAGNWPAKEAHDLAQLGLSCLEMRSKNRPDLKNMVSVELERLKGIAIVASGPVQVVPGLGPPSHFLCPILKTVMQDPCIAADGHTYERNAILMWLCEHDVSPVTKALLPNKTIVSNQSLLSAISSWRSQGGGL
Length782
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.235
Instability index40.24
Isoelectric point6.87
Molecular weight85606.64
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17987
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.78|      22|      60|     177|     198|       1
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  157-  176 (22.83/10.67)	..SSKICKSIPSF...CTTYIVSKD
  177-  198 (36.62/21.70)	GLSSVYSPGLGSE...TSSYLSDSS
  204-  228 (24.60/12.08)	GLLSLPSSNLASEnlkSSSSAERNR
  238-  259 (31.73/17.78)	GSASVYADKDRRI...TSCTDSESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.63|      44|     639|      59|     106|       2
---------------------------------------------------------------------------
   59-  106 (70.96/54.93)	PVLAVP..TPLGNYI.PI.DEVRPDiaEAYAKEVHVQAQEMLLPYrkMCDEN
  701-  748 (67.67/41.14)	PVQVVPglGPPSHFLcPIlKTVMQD..PCIAADGHTYERNAILMW..LCEHD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17987 with Med32 domain of Kingdom Viridiplantae
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