<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17985

Description Uncharacterized protein
SequenceMAAPPRSLDYWRGFFNGAQASIFDAIDAAIRVAAADHPDGLRARRAAIAEHLYTVLPPSEEAVWPAPAFAGAPPLQEQHGSSDGPAVSTHRDSSGDPVVAEAVRVKAALSSNQQKSEDELLDLLRRLQLLQFTVDTVRVTEIIKAVQPLRKHASKQIRQLAGSLIEGWQATVNEWMNNEAAIIDHTPQSMDVSCLEQEEGGLPSPPMDEAALFATSFAYRELSEFFDEMDDDGNTIINGKEDEQQYPTNEDSVKEQPSMVQQYDPVQNWRLDQSAVRQSRLHELSGWQVSHQSMTEAQGKPSNAAFGLIRPSRLHSEPIGSKIKISPKQLQDISVAHSQRRPKPTMPNQRSNEEYKCWIRKTCRSK
Length366
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.622
Instability index61.39
Isoelectric point5.45
Molecular weight40767.07
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17985
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.01|      47|     147|      57|     104|       1
---------------------------------------------------------------------------
   57-  104 (80.47/41.82)	PPSEEAVWPAPAFAgAPPLQE..QHGSSDG.PAVSTHRDSSGDPVVAEAVR
  205-  254 (73.53/34.41)	PPMDEAALFATSFA.YRELSEffDEMDDDGnTIINGKEDEQQYPTNEDSVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.68|      19|      39|     283|     301|       6
---------------------------------------------------------------------------
  283-  301 (34.30/20.38)	ELSGWQVSHQSMTEAQGKP
  324-  342 (32.38/18.88)	KISPKQLQDISVAHSQRRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17985 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAFAGAPPLQEQHGSSDGPAVSTHRDSSG
2) DDDGNTIINGKEDEQQYPTNEDSVKEQPSMVQQYDPVQNW
3) EPIGSKIKISPKQLQDISVAHSQRRPKPTMPNQRSNEEY
4) RLHELSGWQVSHQSMTEAQGKPSNAAFGLIRPSR
66
230
317
280
95
269
355
313










Molecular Recognition Features






MoRF SequenceStartStop




1) AFGLIRPSRL
2) AYRELSEF
3) IKISPKQLQDISVA
4) QRSNEEYKCWIRKTCRSK
5) RSLDYWRGFF
305
218
323
349
6
314
225
336
366
15