<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17967

Description Uncharacterized protein
SequenceMSFIPLHNPPIVTEAKRHDAGGKKAAAVTAAMRRLASKGRDNGSAAASAGKTAAVAVDGDRSSQHALKWAADHVLSRAQSFFLIHVRRKSGSPLSAGGKQFSTSHVQEDVATSFLVQLDLQTKELMLPFQCFCSRRGLQCREVILDGTDVPKAIVDFVVQYNVDKIVLGSSTRSAFTRTIWKMDVATSVTKYAPNFCSVYVIAKGKLSTFRPATHANENDMSEEDIKSDAAGNRLLAVKSEQAHNFPGKEPYSYRLMSTHAAMHIGTNADESAEGGKFKAPSQQRSVDSHLVKTSSCPSEFIRTMNQRSSHLSPEYPDNRRDTLFLLNKDNEHAFQAPHGKYLGIDDNALSLEYNACDPLMPSGQCASSTFNYQTENVETDPRHFQQKNGNILPQNYRELPLEPRDGIENSYAIDKQDIDPLRSRYDAETSSAVRGPKQKLLTLETSSSDPQHRERIIEEFVDHNSQRQVHPMLRRLPPKFFSPRNDRHGSASEEKHILEPDSNPLPRPIETKRILECLPTRLECRLYNPNEIAKATRNFSAELKVGEGGYGPVYKATLDNTLVAVKILHSNVTQGLKQFQQEIDLLNNLRHPNMVHLVGACPEYGCLVYEYMPNGSLEDCLYCRSGTPPLPWQLRFKIAVEIATGLLYLHKMKPAAFVHRDLKPGNILLDENFVSKIADVGLARIIPRSMDETKTQYRMTDAAGTFCYIDPEYQKTGLVSTKSDVYALGIIYLQIITAKDAMGLAYGVSDALEEGTFEELLDPKVTGWPVEETKKFAELALKCCELRRRDRPDLESVVLPELISLHRLAVPSAYPSMNQPHQSSASDKDLALGDDSLADDLTEGSVKVPSLSA
Length854
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.460
Instability index50.58
Isoelectric point6.55
Molecular weight94917.35
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17967
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.76|      23|      48|     330|     353|       2
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  330-  353 (37.84/32.25)	DNEHaFQAPHGKYLGIDDNALSLE
  381-  403 (43.92/32.41)	DPRH.FQQKNGNILPQNYRELPLE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.71|      28|      48|     476|     505|       3
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  476-  505 (48.11/30.11)	RLPPKFFSP....RNDRHGSAseEKHILEPDSNP
  522-  553 (45.59/23.25)	RLECRLYNPneiaKATRNFSA..ELKVGEGGYGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.75|      21|     159|     273|     311|       4
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  160-  180 (36.85/13.19)	QYNVD.KIVLGSSTRSAFTRTI
  284-  305 (34.91/27.32)	QRSVDsHLVKTSSCPSEFIRTM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.14|      49|     207|      13|      61|       5
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   13-   61 (79.01/58.32)	TEAKRHDAGGKKAAAVTAAMRRLASK........GRDNGS.......AAASAGKTAAVAVDGDR
  214-  277 (69.13/50.02)	THANENDMSEEDIKSDAAGNRLLAVKseqahnfpGKEPYSyrlmsthAAMHIGTNADESAEGGK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17967 with Med32 domain of Kingdom Viridiplantae
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