<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17966

Description Uncharacterized protein
SequenceMAVVSRARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAVGKDLKDSRSSLIWAAGNLLHGGDLRLVLLHVHQPAERIMNGLCKVPASHLEEKELRAYRRIEKDDMDALLNQYLNFCRISLKVQAETLVIEKNTPAHGIIELIDKYHITKLVMGTSSVSVKRNIPKSKVAASVHLQAKPYCQIFYVSKETLACSREATQLSVKPESPRSSCASSLSDQSEFPARSASLPPGHPGFLGSADQEALPRRSNSVSYPLSGSIVDSVENLSLARRQSIDMTSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQHSMVETVIQNEVFEQLHRVRNELERSRKEASEGRQKAEKDLYEASMKFRARENSLCREKKEVEERLTREKAGLEKEHLNICNELQKANGKRAELENKLLQANCRIEELQQLQGELQCEKDHAVREAEEMRQINGNIVFGSTGAVALTEFSYTEIKEATSDFDDSKKIGHGGCGSVYKGFLRHTTVAIKKFNREGTTGEKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFMSNGSLEDCLQCKNQTHPLSWKMRIRIAADICIGLIFLHSNKPKGIAHGDLKPDNVLLDASFVCKLADFGISRPLNLTNTTVTPYHRTNQIKGTMGYMDPGYIASGELTAQYDVYSFGVVLMRLLTGKNPLGLPNEVEAALSNGLLQDIMDASAGDWPPEYTEELARLALRCCRYDRKKRPDLANEAWGVLQAMINYPDDKSATPSFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKMSPTIYLDLAHHELIPNNALRFAIQEWQMQQKP
Length869
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.490
Instability index45.39
Isoelectric point6.27
Molecular weight96650.42
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17966
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.98|      40|      42|     409|     449|       1
---------------------------------------------------------------------------
  369-  399 (39.91/23.05)	...............QNEVFEQLHRVRNEL..ERSR.KEASEGRQKAEK
  409-  449 (64.22/46.78)	RAR.ENSL....CReKKEVEERLTREKAGL..EKEH.LNICNELQKANG
  451-  494 (41.84/24.85)	RAElENKLlqanCR....IEE.LQQLQGELqcEKDHaVREAEEMRQING
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.88|      50|     222|      23|      81|       2
---------------------------------------------------------------------------
   23-   72 (84.95/42.55)	SPRSPHPEVERMFMRGGSGRSSNGSGTN.......RSASL.............REIDEEAATISEPEEDN
  238-  300 (44.55/19.07)	.......EATQLSVKPESPRSSCASSLSdqsefpaRSASLppghpgflgsadqEALPRRSNSVSYPLSGS
  324-  358 (43.38/24.30)	SPNSSQQSTVGSSLDLKDLDSMDGSPTP.......VSIAI.............SE...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.20|      19|      36|     126|     144|       3
---------------------------------------------------------------------------
  112-  130 (28.34/18.12)	HVHQPAERIMNGLCKVPAS
  131-  149 (29.42/19.08)	HLEEKELRAYRRIEKDDMD
  150-  168 (26.44/16.40)	ALLNQYLNFCRISLKVQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.80|      34|      40|     589|     626|       4
---------------------------------------------------------------------------
  589-  626 (55.18/41.92)	LVFeFMSN...GSLEDCLQCKNQTHPLSWKMRIriaADICI
  628-  664 (54.62/30.55)	LIF.LHSNkpkGIAHGDLKPDNVLLDASFVCKL...ADFGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.58|      32|      42|     498|     529|       5
---------------------------------------------------------------------------
  498-  529 (52.80/38.77)	FGSTGAVALTEFSY...TEIKEATSDFDDSKKIGH
  539-  573 (48.78/35.25)	FLRHTTVAIKKFNRegtTGEKEFNDEVETLSRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.42|      34|      47|     670|     705|       6
---------------------------------------------------------------------------
  670-  705 (57.51/44.41)	LTNTtvTPYHRTNQIKGTM..GYMDPGYIAS.GELTAQY
  718-  754 (51.91/33.63)	LTGK..NPLGLPNEVEAALsnGLLQDIMDASaGDWPPEY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17966 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IDMTSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQH
2) MAVVSRARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAV
316
1
361
82










Molecular Recognition Features






MoRF SequenceStartStop




1) RMFMR
33
37