<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17965

Description Uncharacterized protein
SequenceMQPSGPPQPPRYPILGSTAPPQNMGPPMPMQFRPAGPPQQPSQFIQLPPQQFRPVGQAMPGANVGMPGSMPHFPQPGQHIPHSGHVPPASQAVRTVYQADRPMSLVPMHPQQQAVFRGGHMATMGACMPPHNFQCQPTSVPPVAQPRGTAPGQSIPLVPLVVQPWHQSVSASSFAIATVQVSSTEPSSCDWQEHTSQAGKKYYYNKRTRQSSWKKPAELMTPLERADASTEWKEFTTAEGQKYYYNKLTNESKWSIPDELKVAREQAEKALIQQPDRVTETTASAPVGSTSVPFSSEVGIIASSTHDRISNLPLPPVNGLSYNAGITSSYVMQTGGTSNAVVAPVTATTGVSSVATDSGTSRNESSSQTIITDTKTGASAEDLEEAKKTMPTAGKIVIPLEEKRSEEPVTSANKLEARNAFKALLESVNLESDWPWDRAMRVIINDKRYSALKTLGERKQAYNEYLNQRKKIEAEERRVKQRKARDDFLTMLEECKGLTSSTRWGKAITMFEDDKRFSAVEHPRDREDLFEYFLVDLQKKERAKAAEEHKRHVVEYRVFLESCGFIKANTQWRKVQDRLEDDEHCSRLEKIDRLDIFQEYIWDLEEKEEEQKWIQKEQARRQERKNRHEFRKMLDEHVADGTLTAKTHWRDYCAQVKDSCAYLAVASNTSDSMPKELFEDVMEELQEQYQDDKTLIKDEVKCGKIHMTTSWTLVDFQAAVTEDENCKGISNINIKLIYDDLIGRLREKNLKEAKKRQRLGDNFLDLLYSIKEISATSTWDDSKPLFEDSQDYMALDSDTYARELFEECVIHLKERLKEKKRMRGRKGNAKKEKECEERKKKKEIENEKKEKERKEKERERGKKREKDRSKRDEMEIDGSDVDIRRSKYKRRGKDKKKKQKRRNDDTTDDVSSEGNEKDDLKKSKRHSRDRKKSWKA
Length936
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.996
Instability index54.34
Isoelectric point8.78
Molecular weight107194.58
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17965
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     139.24|      17|      17|      20|      36|       1
---------------------------------------------------------------------------
    2-   16 (22.08/ 8.23)	..Q....PSGPPQPP.RYPILG
   20-   36 (38.11/19.33)	PPQ....NMGPPMPM.QFRPAG
   37-   56 (26.76/11.47)	PPQqpsqFIQLP.PQ.QFRPVG
   60-   77 (25.91/10.88)	PGA....NVGMPGSMpHFPQPG
   81-   97 (26.38/11.21)	PHS....GHVPPASQ.AVRTVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     449.63|      66|      66|     476|     541|       2
---------------------------------------------------------------------------
  416-  482 (84.85/50.33)	EARNAFKALLES..VN..LESDWPWD.....RAMRVIINDKRYSAL.KTLGE..RKQAYNEYLNQRK.........KIE...........aeERRVKQR
  483-  558 (89.76/53.67)	KARDDFLTMLEE..CKG.LTSSTRWG.....KAITMFEDDKRFSAV.EHPRD..REDLFEYFLVDLQ.........KKErakaaeehkrhvvEYRV...
  559-  624 (73.04/42.31)	........FLES..CGF.IKANTQWR.....KVQDRLEDDEHCSRL.EKI.D..RLDIFQEYIWDLEekeeeqkwiQKE.............QARRQER
  625-  688 (58.08/32.14)	KNRHEFRKMLDEhvADGtLTAKTHWR.....DYCAQVKDSCAYLAVaSNTSDsmPKELFEDVMEELQ.........EQ.....................
  690-  758 (59.22/32.91)	..QDDKTLIKDEvkCGK.IHMTTSWTlvdfqAAVTEDENCKGISNI.NIKLI..YDD....LIGRLR.........EKN...........lkEAKKRQR
  759-  825 (84.69/50.22)	LG.DNFLDLLYS..IKE.ISATSTWD.....DSKPLFEDSQDYMAL.DSDTY..ARELFEECVIHL...........KE.........rlkeKKRMRGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.95|      30|      34|     853|     886|       3
---------------------------------------------------------------------------
  853-  873 (27.92/ 9.99)	.............RKEKER.ERGKKREKDRSKRDE
  877-  904 (29.38/19.47)	DGSDvDIRRSkykR.......RGKDKKKKQKRRND
  905-  932 (32.64/10.72)	DTTD.DVSSE...GNEKDDlKKSKRHSRDRKK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.83|      38|      38|     190|     227|       4
---------------------------------------------------------------------------
  190-  227 (74.21/45.35)	DWQEHTSQAGKKYYYNKRTRQSSWKKPAELMTPLERAD
  231-  268 (71.63/43.52)	EWKEFTTAEGQKYYYNKLTNESKWSIPDELKVAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.37|      15|      17|     356|     372|       5
---------------------------------------------------------------------------
  356-  372 (20.52/16.69)	TdsGTSRN..ESSSQTIIT
  376-  392 (20.85/10.00)	T..GASAEdlEEAKKTMPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.68|      12|      16|     134|     146|       7
---------------------------------------------------------------------------
  134-  146 (21.61/17.99)	QCQPTsVPPVAQP
  153-  164 (22.08/12.62)	QSIPL.VPLVVQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.48|      20|      25|     294|     317|       9
---------------------------------------------------------------------------
  294-  317 (30.15/28.97)	FSSEVGIIAS......SThdriSNLPLPPV
  320-  345 (28.33/16.37)	LSYNAGITSSyvmqtgGT....SNAVVAPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17965 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ACMPPHNFQCQPTSVPPVAQPRGTAPGQSIPL
2) KKRMRGRKGNAKKEKECEERKKKKEIENEKKEKERKEKERERGKKREKDRSKRDEMEIDGSDVDIRRSKYKRRGKDKKKKQKRRNDDTTDDVSSEGNEKDDLKKSKRHSRDRKKSWKA
3) MQPSGPPQPPRYPILGSTAPPQNMGPPMPMQFRPAGPPQQPSQFIQLPPQQFRPVGQAMPGANVGMPGSMPHFPQPGQHIPHSGHVPPASQAVRTVYQADRPMSLVPMHPQQQAVFRGGHMAT
4) VVAPVTATTGVSSVATDSGTSRNESSSQTIITDTKTGASAEDLEEAKKTMPTAGKIVIPLEEKRSEEPVTSAN
126
819
1
341
157
936
123
413










Molecular Recognition Features






MoRF SequenceStartStop




1) EIDGSDVDIRRSKYKRRGKDKKKKQKRRN
2) NEKDDLKKSKR
3) RKKSWKA
875
915
930
903
925
936