<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17964

Description Uncharacterized protein
SequenceMDVPDKGGPERGGVDRELGVGEAEREQQETPPPRGQDVPPQFRELRDGGAGHEQQETLGGQEVPPQFREITDYQLENDFMLMASAGEVSIREETFQHITSLKDGYLSKLMELDRMYVVPNLTKEHVQSLPSDETEEFNSRVRIKKLISEMLEFLQMQKSHVYDSLAEKLPKYKEHIQFLLSVGKEIKAEDAKMNTGYGLQNCCEQPQMVNLTGSAVRSPGSKRCKHNLQVGSSSPAAPWSSLHSMWRTLRSESVPPFPDWTFLQQQGGSSSPNKLKRVFEHTTSPPESPPFENIERQKIRNEIKTINSRLIDTEISITDDSGTYGIPTSCDAGTTIKISYTAVAFSPDLKPPLAEFGKSIVMPVKLFVPPDYPRSSPMLIFDKVDDQLRKKMSAISDLVDVAFLLTLDNLPEPWSIQEIATAWDTCVRKAMIEFAHRHGGGTFSSRFGGWKRSDGS
Length456
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.595
Instability index60.89
Isoelectric point5.46
Molecular weight51148.20
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.15|      22|      24|      21|      44|       1
---------------------------------------------------------------------------
   21-   44 (42.24/31.34)	GEAEREQQETPPprGQDVPPQFRE
   48-   69 (45.91/27.20)	GGAGHEQQETLG..GQEVPPQFRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.24|      19|      32|     240|     259|       2
---------------------------------------------------------------------------
  240-  259 (32.57/22.40)	SSLHSMWRTLRS.....ESvPPFPD
  270-  293 (28.67/15.16)	SSPNKLKRVFEHttsppES.PPFEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.71|      20|      27|      75|     101|       3
---------------------------------------------------------------------------
   75-  101 (28.41/30.98)	LENDFMLMasagevsIREETFQHITSL
  110-  129 (35.30/21.82)	MELDRMYV.......VPNLTKEHVQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.96|      49|     126|     171|     222|       4
---------------------------------------------------------------------------
  171-  222 (82.16/63.45)	KYKEHIQFLLS..VGKEIKAEDakmNTG.YGLQNCCEQPQMVNLTGSAVR.SPGSK
  298-  350 (69.80/46.07)	KIRNEIKTINSrlIDTEISITD...DSGtYGIPTSCDAGTTIKISYTAVAfSPDLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17964 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDVPDKGGPERGGVDRELGVGEAEREQQETPPPRGQDVPPQFRELRDGGAGHEQQETLGGQEVPPQFRE
1
69










Molecular Recognition Features






MoRF SequenceStartStop




1) RGQDVPPQFRELRD
2) VDRELGVGEAEREQQE
34
14
47
29