<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17963

Description Uncharacterized protein
SequenceMYGRHKARLRARVRIKSTGKLVQIFQGRYHPHSPEIQSIVAEFEESAFNVANSKEQYLRFISNKLISTEKRLRAEQERQMHCSQLQSDIAFQVKALHGGSSSMPQAGRSASPRGPSSQMAPRTSGLMPNLRPYTPNMQSEVMQEQTDMMTFLDQFLNFEPTGNAPMEPGIQPGPQPMQSVANQSQNQDSFRQLQATNFAGCSPTCVAMPGIQPYSQQNSIGRRNASGIGTQQSPLQSCKPEHMTPGLQHITGAHQSNLLRGNPQTPASMRSAREVDLIEKMFRQIKSWNEAYFSKFMELERGILVPKLTEEQLSSLPKDTAKRYVYSVNAKKGARKVLNFLQLQKSNLHEGLKSEFPMIEKLIRQLLGVIESKKTHNAKMSTGYQLQNCGQQSQVGNAAPTTGGKSGSMSQSRRIILAGTPPAHQQENSNRLLGVASPCSISASGTLQSLPTNKLECLTPSPVAKSAVAPSASPCALVKPILTSPVAEPVVAPAALPCAPVVSIPMDCDSILSFLSHDNAARPAQDPNANGSNQATPKATTSASPLQTETVRGTGEDQVRGGAETPVGNRPFNRLIDAIRSSSPAALQKSANLFWSVLTMDDTVPPGNIGTILDCKVSQQQHGGFNAVDKMKRVFDHTELHSESLPFGSAMPFECDASGCGSSSERSMKRHKTQFSSQNPNDALLEEIKSINNVMIDTVISITGDCGTDRITSCDGGTIIKLSYSAASLDPTLKALLATSEMSLVMPSNLFVPADYPSSSPVLIDEGDEQLRKKFSDISALVHVAFRHALRELPEPRSIKETARAWDACVRKAVVEFAEQHGGGTISSMLGRWERYATA
Length839
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.433
Instability index65.75
Isoelectric point8.96
Molecular weight91182.45
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17963
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.71|      36|      38|     137|     172|       1
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  137-  172 (68.27/42.31)	MQSEV.MQEQT.DMMTFLDQFLNFEPTGNAP...MEPGIQP
  177-  213 (50.42/29.18)	MQSVA.NQSQNqDSFRQL.QATNF..AGCSPtcvAMPGIQP
  216-  248 (44.02/24.48)	QQNSIgRRNAS.GIGTQQSPLQSCKP...EH...MTPGLQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.78|      21|      21|     461|     481|       2
---------------------------------------------------------------------------
  461-  481 (38.44/21.53)	SPVAKSAVAPSASPCALVKPI
  484-  504 (37.73/21.00)	SPVAEPVVAPAALPCAPVVSI
  518-  537 (27.61/13.37)	DNAARPAQDPNANGSNQATP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.39|      28|     145|     398|     447|       3
---------------------------------------------------------------------------
   98-  125 (51.32/14.08)	GGSSSMPQAGR...SASPRGPSSQMAPRTSG
  404-  434 (45.07/33.36)	GKSGSMSQSRRiilAGTPPAHQQENSNRLLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.75|      16|      41|     296|     311|       4
---------------------------------------------------------------------------
  296-  311 (26.04/16.35)	FMELERGILVPKLTEE
  340-  355 (25.71/16.06)	FLQLQKSNLHEGLKSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.55|      11|      36|     631|     643|       5
---------------------------------------------------------------------------
  631-  643 (15.87/17.95)	MKRvfDHTELHSE
  668-  678 (20.68/13.98)	MKR..HKTQFSSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.46|      35|     304|     251|     295|       9
---------------------------------------------------------------------------
  251-  295 (53.04/48.41)	TGAHQsnlLRGNPQTPASMRS.AREVDliekmfrQIKSWNEAYFSK
  554-  589 (57.43/31.37)	TGEDQ...VRGGAETPVGNRPfNRLID.......AIRSSSPAALQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17963 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CGQQSQVGNAAPTTGGKSGSMSQSRRIILAGTPPA
2) MMTFLDQFLNFEPTGNAPMEPGIQPGPQPMQSVANQSQNQDSFRQLQA
3) NAARPAQDPNANGSNQATPKATTSASPLQTETVRGTGEDQVRGGAETPVGNRPFNRL
4) QPYSQQNSIGRRNASGIGTQQSPLQSCKPEHMTPGLQHITGAHQSNLLRGNPQTPASMRSAR
5) VKALHGGSSSMPQAGRSASPRGPSSQMAPRTSGLMPNLRPYTPNMQSEVMQEQT
389
148
519
212
93
423
195
575
273
146










Molecular Recognition Features






MoRF SequenceStartStop




NANANA