<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17962

Description Uncharacterized protein
SequenceMYGRHKARLRARVRIKSTGKLVQIFQGRYHPHSPEIQSIVAEFEESAFNVANSKEQYLRFISNKLISTEKRLRAEQERQMHCSQLQSDIAFQVKALHGGSSSMPQAGRSASPRGPSSQMAPRTSGLMPNLRPYTPNMQSEVMQEQTDMMTFLDQFLNFEPTGNAPMEPGIQPGPQPMQSVANQSQNQDSFRQLQATNFAGCSPTCVAMPGIQPYSQQNSIGRRNASGIGTQQSPLQSCKPEHMTPGLQHITGAHQSNLLRGNPQTPASMRSAREVDLIEKMFRQIKSWNEAYFSKFMELERGILVPKLTEEQLSSLPKDTAKRYVYSVNAKKGARKVLNFLQLQKSNLHEGLKSEFPMIEKLIRQLLGVIESKKTHNAKMSTGYQLQNCGQQSQVGNAAPTTGGKSGSMSQSRRIILAGTPPAHQQENSNRLLGVASPCSISASGTLQSLPTNKLECLTPSPVAKSAVAPSASPCALVKPILTSPVAEPVVAPAALPCAPVVSIPMDCDSILSFLSHDNAARPAQDPNANGSNQATPKATTSASPLQTETVRGTGEDQVRGGAETPVGNRPFNRLIDAIRSSSPAALQKSANLFWSVLTMDDTVPPGNIGTILDCKVSQQQHGGFNAVDKMKRVFDHTELHSESLPFGSAMPFECDASGCGSSSERSMKRHKTQNPNDALLEEIKSINNVMIDTVISITGDCGTDRITSCDGGTIIKLSYSAASLDPTLKALLATSEMSLVMPSNLFVPADYPSSSPVLIDEGDEQLRKKFSDISALVHVAFRHALRELPEPRSIKETARAWDACVRKAVVEFAEQHGGGTISSMLGRWERYATA
Length835
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.433
Instability index65.64
Isoelectric point8.96
Molecular weight90732.99
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17962
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.71|      36|      38|     137|     172|       1
---------------------------------------------------------------------------
  137-  172 (68.27/36.45)	MQSEV.MQEQT.DMMTFLDQFLNFEPTGNAP...MEPGIQP
  177-  213 (50.42/25.04)	MQSVA.NQSQNqDSFRQL.QATNF..AGCSPtcvAMPGIQP
  216-  248 (44.02/20.95)	QQNSIgRRNAS.GIGTQQSPLQSCKP...EH...MTPGLQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     182.12|      47|     145|     398|     447|       2
---------------------------------------------------------------------------
   98-  132 (47.40/24.98)	....GGSSSMPQAGRSASPRGPSSQMAPRTSGLMPNLRP............
  400-  450 (69.05/49.32)	PTTGGKSGSMSQSRRIILAGTPPAHQQENSNRLLGVASPCSIsasGTLqSL
  451-  477 (42.19/21.12)	PTNK.............LECLTPSPVAKSA..VAPSASPCAL.........
  484-  504 (23.48/ 8.14)	.......................SPVAEPV..VAPAALPCA....PVV.SI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.37|      25|     145|     505|     530|       3
---------------------------------------------------------------------------
  505-  530 (39.98/30.39)	PMDCDSILSfLSHDNAARPAQDPNAN
  545-  569 (42.39/26.85)	PLQTETVRG.TGEDQVRGGAETPVGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.75|      16|      41|     296|     311|       4
---------------------------------------------------------------------------
  296-  311 (26.04/17.70)	FMELERGILVPKLTEE
  340-  355 (25.71/17.38)	FLQLQKSNLHEGLKSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.85|      23|     145|     606|     637|       6
---------------------------------------------------------------------------
  606-  633 (32.49/38.23)	PGNiGTILDCKVSqqqhG.GFNAVDKMKR
  647-  670 (38.36/17.36)	FGS.AMPFECDAS....GcGSSSERSMKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.92|      24|     524|     249|     276|       7
---------------------------------------------------------------------------
  249-  276 (35.31/32.03)	HITGAHQsnlLRGNPQtPASMR.SAREVD
  779-  803 (40.61/23.55)	HVAFRHA...LRELPE.PRSIKeTARAWD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17962 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CGQQSQVGNAAPTTGGKSGSMSQSRRIILAGTPPA
2) MMTFLDQFLNFEPTGNAPMEPGIQPGPQPMQSVANQSQNQDSFRQLQA
3) NAARPAQDPNANGSNQATPKATTSASPLQTETVRGTGEDQVRGGAETPVGNRPFNRL
4) QPYSQQNSIGRRNASGIGTQQSPLQSCKPEHMTPGLQHITGAHQSNLLRGNPQTPASMRSAR
5) VKALHGGSSSMPQAGRSASPRGPSSQMAPRTSGLMPNLRPYTPNMQSEVMQEQT
389
148
519
212
93
423
195
575
273
146










Molecular Recognition Features






MoRF SequenceStartStop




NANANA