<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17961

Description Uncharacterized protein
SequenceMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKAREEFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQEQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEKEEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKTNWRDYHLKVKDLPAYVAVASNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGSPHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIFDGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
Length712
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.05
Grand average of hydropathy-1.174
Instability index55.35
Isoelectric point5.69
Molecular weight82632.86
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17961
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.49|      20|      21|     272|     292|       2
---------------------------------------------------------------------------
  277-  299 (27.14/10.69)	YLQELEEKERAKAQEQrkrNIME
  300-  321 (24.34/ 8.30)	YRQFLESCEFIKASTQ.wrKVQD
  344-  359 (25.01/13.56)	YLHDLEKEE....EEQ...RKIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      16|      16|     627|     642|       3
---------------------------------------------------------------------------
  627-  642 (25.98/13.09)	DNSRKQRKR..HQNAVDD
  644-  661 (18.43/ 6.80)	DESEKDRSKssHRHSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.67|      10|      16|     526|     538|       4
---------------------------------------------------------------------------
  526-  538 (15.81/18.95)	CKEIFDgsrEYSS
  545-  554 (20.86/13.15)	CREIFE...EYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.20|      34|      36|      14|      47|       5
---------------------------------------------------------------------------
   14-   39 (36.41/25.97)	............STS.VPPSADKTPSIVDASTAQGAPSS
   40-   77 (44.29/33.41)	PVLVIPVAaagnSQS.QLASESSTLPVMSSSMTTNADEV
   78-  109 (44.49/33.59)	QTIEIPVA.......dVPKSAEVTATAVNTITAPMNNFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.79|      43|      65|     160|     204|       6
---------------------------------------------------------------------------
  181-  248 (45.31/23.50)	DQAMRVIINDKRYGALKTLGERKQafneflgqkrkqeaeerrikqkKarEEFKNMLeES.KELTASIRL
  249-  272 (26.39/ 7.74)	SKAVTLFENDERFKAVERERDRKD.............................................
  490-  523 (33.09/11.95)	...........REKEEKEARKRKR.....................lE..DDFLILL.QSiKDITASSKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.39|      20|      23|     666|     688|      10
---------------------------------------------------------------------------
  666-  685 (35.06/19.48)	RRHASTPE.SDSESRHKRHKR
  692-  712 (30.32/ 9.09)	RRTGDLEDlEDGEFGEDRETR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.46|      22|     207|     150|     180|      11
---------------------------------------------------------------------------
  157-  180 (34.09/42.19)	DKLEAKNLFKalLESANVGSEWTW
  436-  457 (35.37/18.06)	DKTRIKDVVK..LKKVPLASTWTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.61|       9|     337|     131|     147|      14
---------------------------------------------------------------------------
  118-  126 (15.97/ 6.94)	DE....APAQDKE
  135-  147 ( 9.64/ 6.90)	DEkvnnVPLEEKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17961 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
2) MEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVAD
3) VTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDE
560
1
93
712
86
136










Molecular Recognition Features






MoRF SequenceStartStop




1) EDLEDGEF
698
705