<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17960

Description Uncharacterized protein
SequenceMANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPVGRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSPLPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPTGGHPASSMNHNTAPVTPIQRNGEQSSVTTTNVRATSIQPKPTEEALTEWKEHTSANGRRFYYNKRTRQSSWEKPYELLTPIERADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKAREEFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQEQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEKEEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKTNWRDYHLKVKDLPAYVAVASNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGSPHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIFDGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
Length1022
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.068
Instability index60.55
Isoelectric point6.29
Molecular weight116823.11
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17960
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.56|      20|      20|      88|     107|       1
---------------------------------------------------------------------------
   59-   83 (31.45/11.01)	PVGRGvtvmNPGLP.......PQPPQ..PqFPHP
   88-  107 (43.66/17.76)	PARPN....QPSLG.......PPPPQ..A.IPLP
  151-  179 (22.46/ 6.04)	PSSYG....QPPVTfnavtqfQPMPQmhV.QPIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.65|      19|      20|     374|     393|       3
---------------------------------------------------------------------------
  338-  355 (21.22/10.65)	..VDASTAQGAPSSPVLVIP
  374-  393 (27.44/22.01)	PvMSSSMTTNADEVQTIEIP
  398-  414 (24.99/14.43)	P...KSAEVTATAVNTITAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.29|      18|      20|     937|     956|       4
---------------------------------------------------------------------------
  904-  921 (25.97/14.25)	R..............GHDRETRKEEED.VE.IDD
  922-  955 (11.32/12.13)	TietqvcsdkkrsgsDNSRKQRKRHQNaVDdLDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.49|      20|      20|     580|     599|       5
---------------------------------------------------------------------------
  580-  599 (32.92/19.32)	RKDLIETYLQELEEKERAKA
  603-  622 (35.17/21.14)	RKRNIMEYRQFLESCEFIKA
  647-  662 (20.40/ 9.21)	RIEIFQDYLHDLEKEE....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.57|      37|      40|     221|     257|       6
---------------------------------------------------------------------------
  221-  257 (74.46/45.69)	PTE..EALTEWKEHTSANGRRFYYNKRTRQSSWEKPYEL
  260-  298 (70.11/42.60)	PIEraDASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.97|      19|      23|      12|      30|       7
---------------------------------------------------------------------------
   12-   30 (41.23/22.35)	PLQPPLVGPMDHPQNFAP...P
   34-   55 (31.38/15.24)	PIQFRPVGPVQPSQQFIPvssP
  120-  134 (23.17/ 9.32)	PLPPP...SVQTPNSYMP....
  135-  150 (20.19/ 7.17)	GLGGPGV.PLSSSYTFA.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     233.08|      62|      65|     747|     811|       9
---------------------------------------------------------------------------
  486-  536 (57.54/33.91)	...................SEWTWDQAMRVIIND...KRYGALktlgE....RKQAFNEFLGQKRKQEAEERRiKQK
  749-  811 (89.73/64.98)	RIKD.....VVKLKKVPLASTWTLEDLKVAIIEDvGSPHISDV....N....LKMVFDELLERAREKEEKEAR.KRK
  812-  878 (85.81/51.80)	RLEDdflilLQSIKDITASSKW..ESCKE..IFD.GSREYSSI....GeegfCREIFEEYVSQLKDQEKENEW.KRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.36|      26|     207|     454|     480|      10
---------------------------------------------------------------------------
  454-  480 (37.35/27.84)	EEKAVNHEPLLYADKlEAKNLFKALLE
  664-  689 (43.01/27.63)	EQRKIHKEELRKAER.KNRDEFRKLLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.05|      14|      22|     186|     199|      11
---------------------------------------------------------------------------
  186-  199 (25.73/21.02)	SSMNHNTAPVTPIQ
  205-  218 (22.32/17.10)	SSVTTTNVRATSIQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17960 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
2) IPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQG
3) MANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPVGRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSPLPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPTGGHPASSMNHNTAPVTPIQRNGEQSSVTTTNVRATSIQPKPTEEALTEWKEHTS
4) SSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVAD
5) VTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDE
870
294
1
348
403
1022
345
234
396
446










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKVTK
278
288