<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17958

Description Uncharacterized protein
SequenceMLSLANLPSTRPPDRGLTQVPKSNVSLNTNLKDSPGDLQKSSENLKGEMEHSGNSGNCEQEQGILHSPQVIAQHDPEEFLNFQQGSCLELQSSTLSMVKRDPQTTPAQQQQTQQAPSTLHSPPSMVEQPLLLSQQQEQPKGQKAVATDMSQKLLIAQESRVPDQQHHQQPKLPCPYNDCQSLQSYSPTPEQKLLSQSQPPKLQQILNLSRQDEQQDDIKSEQHLCESNSERENVVNPMQQVSMRSLQLPLSTLPQPNDIKFLLKNNRNERAKANSGRSSSVAQRMDPKQKKSRHHVSAQKKNQESQQGQMCQQLIKGNQEVPQQMQQDDEMPHQLNEANDVKMTQGIEHETALNQRPEVKNLKFRQVTAVKSGVPPSISSPMHIQTEPVQLPRHFPLTNQHNMLRSHTIVGSPSHSVNSQPGFSAKFLSNDSSYLNTDGFGFDASTINFGESCDAEKPILRLIKAVNSISSKALSASVSEIGSVVNLADSMAGSVPLYGSKGSVSEDLGVTSKTNPVARYFSMGCSTFGMRKVKLSTKAVPLNDKTPACPKKSGSESTTFCPNKKPRIQVSRAVLKEIEEINQQLIDTVVDISDEETDSTTVGPDGGGIIIKCSFIAVSISPNFNSKEDFEQISKIQPLKLLVPTKYPYCSPIVLEKLPEEVSEKHDDLSVKARVKLNLHLRNLLQPMSIGEMARTWDKCARTAISEHAVKNGGGCVFSKYGTWENCFSAA
Length731
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.683
Instability index56.21
Isoelectric point7.26
Molecular weight80699.05
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17958
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     265.53|      38|     110|     191|     228|       1
---------------------------------------------------------------------------
   19-   49 (31.46/10.01)	........................QVP....KS.NVSLNTNL...K.................DSPGDLQKSSENLKGEM
   68-   97 (38.21/13.62)	PQVIAQ.................HDP........EEFLNF.........................QQGSCLELQSSTLSM
   98-  149 (36.78/12.85)	VKRDPQttpaqqqqtqqapstlhSPPS....MV.EQPLLLSQ...Q.................QEQP...KGQKAVATDM
  191-  228 (63.18/26.96)	QKLLSQ.................SQPP....KL.QQILNLSR...Q.................DEQQDDIKSEQHLCESN
  247-  297 (25.69/ 6.92)	QLPLST................lPQPN....DI.KFLLKNNR...NerakansgrsssvaqrmDPKQK..KSRHHVS...
  299-  339 (43.38/16.38)	QKKNQE.................SQQG....QMcQQLIKGNQevpQ.................QMQQDD.EMPHQLNEAN
  350-  384 (26.82/ 7.53)	ETALNQ..................RPEvknlKF.RQVTAV.....K.................SGVPPSISSPMHI....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.66|      10|      15|     474|     483|       2
---------------------------------------------------------------------------
  474-  483 (15.96/ 8.97)	LSASVSEIGS
  491-  500 (18.70/11.73)	MAGSVPLYGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17958 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLSLANLPSTRPPDRGLTQVPKSNVSLNTNLKDSPGDLQKSSENLKGEMEHSGNSGNCEQEQGILHSPQVIAQHDPEE
2) QSSTLSMVKRDPQTTPAQQQQTQQAPSTLHSPPSMVEQPLLLSQQQEQPKGQKAVATDMSQKLLIAQESRVPDQQHHQQPKLPCPYNDCQSLQSYSPTPEQKLLSQSQPPKLQQILNLSRQDEQQDDIKSEQHLCESNSERENVVNPMQQVSMRSLQLPLSTLPQPNDIKFLLKNNRNERAKANSGRSSSVAQRMDPKQKKSRHHVSAQKKNQESQQGQMCQQLIKGNQEVPQQMQQDDEMPHQLNEANDVKMTQGIEHETALNQRPEVKNLKFRQVTAVKSGVPPSISSPMHIQTEPVQLPRHFPLT
1
91
78
398










Molecular Recognition Features






MoRF SequenceStartStop




1) IKFLL
259
263