<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17956

Description Uncharacterized protein
SequenceMKSIDDVAHLSQIFGVQLCEPGFLLVEFVFSIVWQLLDASLDDEGLLELGAEKNSRWLPRQEGMEIDGHENFSEKRNEHHEGLHKVNTTMAIELIGEFLKNKLTSRLLYLARQNMPSQWGGFIEQLQLLVVHSAALRNSKHITPDAFLQLTSDTRRVLSRECKTISQHEFHAVMFSGSLKSSVGQCHGASQSAVWLPIDLFLEDTMDGSQVTTTSAIENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNPSEGPVPRLDTCLSMLLSITTLVVANIIEEEESELIDETQQSPTNQRKEKQGKRRKGLITSLQLLGDYEGLLTPPQPVSSVANQAAAKATMFISGLTVSNGYSMSINDMPVNCSGNLRHLIVEACIARNMLDTSAYLWPGYVTLANQVPRSVPSQTLGWLSLMNGSPLTPSMINILVSTPASSLPAIEKIYEIAVDGSDDEKISAAAILCGASLVRGWNIQEHTILFIIKLLSPPVPADYSGSESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPTGEELSCHAVFSNAFTLLLRLWRFEHPPIDHVMGDVPPVGSHLSPEYLLLVRNSLLSSLGTSTRRQLRRRRFSKILSLSVEPIFMDSFPKLKLWYRQHLECIASTFSGLVHGTPVHQIVDALLNLMFRRINRGVQPSTSTNSGSSLSSGPGAEDAQARLKISAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYLSAEVTRGIWKPASMNGTDWPSPAVNLSSVEQQIKKILAATGVDVPSLSVGGTSLATLPLPLAALVSLTITYKLDKMSERFLTLVGPALNALAAGCPWPCMPIIASLWAQKVKRWSDYLVFSASRTVFHHNSDAVVQLLKSCFASTLGLSPPHLSSNGGVGALLGHGFGSHLSGGISPVAPGILYLRVHRSVRDVMFMTEEILSLLMHSVRDIASSAWTRGAMEKLKKSKYGMRYGKVSLAAAMTRVKLAASLGSSLVWISGGLNLVQSLINETLPSWFISVHGLEQEGGESGGLVAMLRGYALAYFALFCGTFAWGVDSESAASKKRPTVLKAHLEFLASALEGKISLGCDWATAWAYASGFVCLMVACTPKWVPEVDVDILKRVSKGLRQWNEEELAVALLGLGGVGTMGAAAELIIEIGL
Length1192
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.176
Instability index48.09
Isoelectric point6.37
Molecular weight129310.97
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17956
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.42|      66|     223|      74|     209|       1
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   50-  126 (98.13/141.81)	GAEKNSRWLPRQEGME..IDGHenfsEKRNEHH....EGLHKVN.TTMAieliGEFLKNKLTSrLLYLARQNMPSQwgGFIEQL
  188-  264 (96.30/40.23)	GASQSAVWLPIDLFLEdtMDGSqvttTSAIENLislvKALQAVNrTTWH....DTFLGLWIAA.LRLVQRERNPSE..GPVPRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     476.87|     123|     125|     674|     798|       2
---------------------------------------------------------------------------
  674-  793 (189.30/131.19)	......QIVDALLNLMF.RRINRGVQ.PSTSTnSGSSLSSGPGAEDAQARLKIS.AWDILEATPFAL........DAALTACAHG............RLSP......RELATGLKDLADFLPASLATIVSYLSAEVTRGIWKP..ASMNGTDWPSPA
  795-  921 (153.64/102.38)	NLSSveQQIKKIL.......AATGVDvPSLSV.GGTSLATLPLPLAALVSLTITyKLDKMSERFLTL.......vGPALNALAAG............CPWPcmpiiaSLWAQKVKRWSDYLVFSASRTVFHHNSDAVVQLLKScfASTLGL...SPP
  922- 1046 (133.93/83.95)	HLSS.nGGVGALLGHGFgSHLSGGIS.PVA...........PGI..LYLRVHRS.VRDVMFMTEEILsllmhsvrDIASSAWTRGameklkkskygmRYGK......VSLAAAMTRVK..LAASLGSSLVWISG....GLNLV..QSLINETLPS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.93|      12|     125|     365|     376|       3
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  365-  376 (24.35/12.53)	PVNCSGNLRHLI
  492-  503 (22.59/11.14)	PADYSGSESHLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.54|      35|      42|     521|     556|       4
---------------------------------------------------------------------------
  521-  556 (58.80/37.91)	CVQILS..LHGLVPLLAGALMPICEAFGsAVPEVSWTL
  564-  600 (62.74/36.44)	CHAVFSnaFTLLLRLWRFEHPPIDHVMG.DVPPVGSHL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17956 with Med33 domain of Kingdom Viridiplantae
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