<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17955

Description Uncharacterized protein
SequenceMATIDAEISEESMSLAIDDIVYVAVGKDVGESKSTLLWALQNFSIKKVCLVHVHQPAKMIPLIGGNFPASRLEQHELREFRELERKIMHKVLDDYLLLCHRAAVHAEKLYIEKDDIGKGIVELMYQHAIKKLVMGAAAERHYSEGMMDLQSRKAKYVQQCAPSSCQIWFICKGHLIHTGTSTDAFADLDPFTLNISGEITGLELELSEIPDMEEESDLHTPDALEQNSVEQLYKQLDRAMEEAEKFKREAFEESLIRGEAEKTSIKALRKVDVLSKLRHPHLVTLIGACSEACALIYEYLPNGNLEDRLNCEGNTPPLSWQVRIRIATELCSALIFLHSSTPTSIVHGDLKPGNVLLDANLSCKLSEFGICLADHNTRNITQYHKTDPEGTFLYLDPHFLTTGELSPKSDTYAFGIILLQLLTGRPEFGLVKEIRDVIDEENLTSLIDPLAGDWPFVQAMQLARLALKCCQMERSSRPDLASEVWSVLEPMRDSCGPLSRFQFGSLQCQTPPPYFICPILQEVMQDPHIAADGFTYEAEALRGWLESGHDTSPMTNLELERFELIPNHALRSVIQEWLQQH
Length581
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.195
Instability index42.47
Isoelectric point5.07
Molecular weight65496.24
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.58|      57|     129|      50|     110|       1
---------------------------------------------------------------------------
   50-  109 (90.55/66.06)	LVHVHQP....AKMIPL...IGGNFPASRLEQHELREFRELERkiMH..KVLDD......YLLLcHRAAVHAEKL
  175-  246 (75.03/40.51)	LIHTGTStdafADLDPFtlnISGEITGLELELSEIPDMEEESD..LHtpDALEQnsveqlYKQL.DRAMEEAEKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.72|      13|      28|     449|     461|       2
---------------------------------------------------------------------------
  449-  461 (26.53/14.84)	P.LAGD.WPFVQAMQ
  478-  492 (16.19/ 6.62)	PdLASEvWSVLEPMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.07|      13|     343|     159|     171|       4
---------------------------------------------------------------------------
  159-  171 (29.68/17.66)	QCAPSSCQI...WFIC
  502-  517 (22.39/11.81)	QFGSLQCQTpppYFIC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17955 with Med32 domain of Kingdom Viridiplantae
Unable to open file!