<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17954

Description Uncharacterized protein
SequenceMAVVSRACCDNATSESIDVCGIRVAGNMESGREIVEEPVARVIEDKIFVAVGKSVKECKLMLLWALQNSGGKRICIIHVLQPSQMIPLMGTKFRASALKEQEVRAYREVERQAMHKMLDEYLSICRKMGVRAEKLYVEMESIEKGILELISHHGIKKLVMGAAADKRHSKNMMDIKSKKAISVCLQAPASCHIWFICKGHLIHTREGALDGTGTDVGSSSQQTSPHTEAGQLSHMRSQSIALGQNHFVKLTNPAQDLVRRVRSMNVNGRGGRLSTPASPDGGPSTPSSRSDADGSSDEYDVLSRSASQNSALSSCTSRGMVNVALVPFVGTEESETGSELSTLPQHKEDLCQSSPPSVLDGSTEDPLYDQLEKAMSDAENSRREAFEEAVRRAKAEKYAFEATRKAKASENLYTEESKRRKEVEEELAKEKEELERINRECDEVMEELRIAEDQKSLLEKQIKESDQMVKELEQKIISAVGLLQNYKKEQDELQKERDNALKEVEELRRSQTEASGTHMSQFFSEFSLSEIEEATQHFDPSLKIGEGGYGSIYKGVLRQTQVAVKMLHSNSLQGPAEFQQEVDVLSKMRHPNLITLIGACPEAWTLIYEYLPNGSLEDRLSCRDNSPPLSWQTRIRIAAELCSVLIFLHSSKQHSIVHGDLKPANILLDENFVTKLSDFGICRLLHHKEGSSNNTAICRTDPKGTFSYMDPEFLSTGELTPKSDVYSFGIILLRLLTARQPLGITKEVQCELDKGNLKTLLDPLAGDWPFVQAEQLAHLALRCCEMSRKNRPDLLSEVWRVLEPMKASCGGSSFFQLGSEEHFQPPSYFICPIFQEVMRDPHVAADGYTYEAEALKGWLDSGHDTSPMTNLKLAHRDLIPNRALRSAIQEWLQQQ
Length895
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.05
Grand average of hydropathy-0.460
Instability index54.47
Isoelectric point5.76
Molecular weight100017.50
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17954
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.07|      41|     282|     526|     594|       1
---------------------------------------------------------------------------
  526-  574 (59.29/70.92)	FSLSeieeATQHFDPSLKIgeggYGSIYKGVLRQTQVAVK..MLHSNSLQG
  815-  857 (70.78/30.47)	FQLG....SEEHFQPPSYF....ICPIFQEVMRDPHVAADgyTYEAEALKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.19|      24|      24|     425|     448|       2
---------------------------------------------------------------------------
  425-  443 (24.31/12.84)	................EELAKEKEELERINRECDE
  444-  467 (33.87/20.95)	VMEEL...........RIAEDQKSLLEKQIKESDQ
  468-  499 (26.01/14.29)	MVKELeqkiisavgllQNYKKEQDELQK...ERDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.48|      17|     344|     350|     366|       4
---------------------------------------------------------------------------
  302-  319 (16.17/ 6.46)	LSRSASQnSALSSCTSRG
  350-  366 (31.30/20.48)	LCQSSPP.SVLDGSTEDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.90|      24|      25|     373|     396|       5
---------------------------------------------------------------------------
  373-  396 (38.18/23.43)	KAMSDAENSRREAFEEAVRRAKAE
  401-  424 (37.71/23.06)	EATRKAKASENLYTEESKRRKEVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.48|      28|     572|     124|     155|       6
---------------------------------------------------------------------------
  103-  123 (24.22/17.43)	..VRAYR.EVERQAMHKMLDEYLS....
  128-  155 (46.82/24.65)	MGVRAEKLYVEMESIEKGILELISHHGI
  160-  181 (35.44/16.06)	MGAAADKRH......SKNMMDIKSKKAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.35|      45|      67|     183|     228|       7
---------------------------------------------------------------------------
  183-  228 (77.55/53.52)	VCLQAPASCHIWFIcKGHLIHTREGAL......DGTGTDVGSSSQQTSPHTE
  248-  298 (70.80/43.27)	VKLTNPAQDLVRRV.RSMNVNGRGGRLstpaspDGGPSTPSSRSDADGSSDE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17954 with Med32 domain of Kingdom Viridiplantae
Unable to open file!