Description | ATP-dependent DNA helicase |
Sequence | METEADVLEELLNIETEIEDVQDQIKLLLERQEKLHERQSELKFLLEAYKASGTGNSANENASRSSSLEDWSGSFEWDSQADDVRLNIFGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVISPLLSLIQDQVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNVPVVALTATATQKVQYDVMEMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGKVVVDEIAEFIQESYSNSESGIVYCFSRKECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLFYRPADVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRNAFFRHFAEPLQDCNGMCDNCAFLSEVMEVDVSRHAKVMVSLLQDTQEKDQRLTMLQLVDKMKNKKELGSDIKKEEMEQLVIQLILDFVFKEEYQHTAYATNAYVTIGPLANQVLQGKKIVKLEISSKQKNKGDSMKSAKHSLAFSGLELKLDELREKLSSGHGGIFPHSVLSSQQMSMISSQKPSSAQELEKIIGKLKTEKYGSKILDEIKKYTGSEPPDNGMLNEEEGSGNRASKRLKTRKGIVVIESSDEEL |
Length | 713 |
Position | Unknown |
Organism | Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.399 |
Instability index | 43.25 |
Isoelectric point | 6.34 |
Molecular weight | 80437.03 |
Publications | PubMed=16973872 |
Annotated function |
|
GO - Cellular Component | chromosome GO:0005694 IBA:GO_Central cytoplasm GO:0005737 IBA:GO_Central mediator complex GO:0016592 IBA:GO_Central |
GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IBA:GO_Central ATP binding GO:0005524 IEA:UniProtKB-KW four-way junction helicase activity GO:0009378 IBA:GO_Central nucleic acid binding GO:0003676 IEA:InterPro |
GO - Biological Process | DNA duplex unwinding GO:0032508 IBA:GO_Central DNA recombination GO:0006310 IBA:GO_Central DNA repair GO:0006281 IBA:GO_Central DNA unwinding involved in DNA replication GO:0006268 IBA:GO_Central double-strand break repair via homologous recombination GO:0000724 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP17952 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 420.53| 137| 204| 327| 475| 1 --------------------------------------------------------------------------- 327- 475 (224.83/179.25) RKECEQVAAEL.RERGIAADYYHADMDVNAREKVHTWWSknklQVIVGTVAFGMGI.....NKPDVRFVIHHSLSKS.ME...TYYQESGRAGRDGLPSECVLfyrpadVPRQSSMVFYEN.SGLQNLYDIVRYCQSKRQCRR..NAFFRHF.AEPlQDcNGM 532- 682 (195.70/127.87) KEEMEQLVIQLiLDFVFKEEYQHTAYATNAYVTIGPLAN....QVLQGKKIVKLEIsskqkNKGDSMKSAKHSLAFSgLElklDELREKLSSGHGGIFPHSVL......SSQQMSMISSQKpSSAQELEKIIGKLKTEKYGSKilDEIKKYTgSEP.PD.NGM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 108.53| 32| 423| 74| 105| 4 --------------------------------------------------------------------------- 74- 105 (56.15/35.77) SFEWDSQADDVRLNIFGIPSYRQNQKEIINAI 499- 530 (52.37/32.92) SLLQDTQEKDQRLTMLQLVDKMKNKKELGSDI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EPPDNGMLNEEEG 2) KILDEIKKYTG 3) LKFLLEAYK 4) NRASKRLKTRKGIVVIESSDEEL | 676 664 42 691 | 688 674 50 713 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab