<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17951

Description Uncharacterized protein
SequenceMDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPASLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMDQRIATKLQQGNWSMQFLILVYVNFAFQHDPLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQAPAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQPLERLIKAANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVCARVVISEHAQQSGGGTFSSKYGSWENCLSAA
Length900
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.603
Instability index60.13
Isoelectric point8.61
Molecular weight98788.33
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17951
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.79|      17|      20|     163|     182|       1
---------------------------------------------------------------------------
  165-  184 (12.89/ 8.52)	SVsGLTQTIPnTVGQNaNMQ
  386-  402 (25.90/ 6.61)	SI.NMQGSVP.KMQQN.NMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.22|      26|      28|     483|     510|       2
---------------------------------------------------------------------------
  348-  377 (43.49/16.10)	PNLQQGQLP..QPHIQPMQQPQsqvpQL...QSHE
  487-  517 (35.74/16.55)	NMIQHQHLKqqQQHEQHMLQTQ....QLkrmQQRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.84|      47|      49|     549|     597|       3
---------------------------------------------------------------------------
  549-  597 (83.04/46.43)	IPQ.PQQMNDVNEMRQGIgiKPAVFQQHLPTA.QRTAFPRQHMK.....PAPSFPI
  599-  649 (62.19/28.83)	SPQlPQHASP..QLQHS...SPQIDQQNLPSSvTKTGTPLQSANspfvvPSPSTPL
  650-  690 (66.61/31.47)	APS.PMP.GDSDKPVSGI.......SSLLNTG.NIVHQPSVAQA.....PAPSLAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.84|      16|      16|     117|     132|       4
---------------------------------------------------------------------------
  117-  132 (29.76/12.16)	QVHNQ.GQSLPNSLSSN
  135-  151 (22.81/ 7.67)	QARQQlSQNMQNSMSSN
  193-  209 (22.26/ 7.31)	PVGNSmGQGIPPNMFVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.70|      16|      16|     446|     461|       5
---------------------------------------------------------------------------
  430-  445 (23.68/ 8.74)	SNLDSGQ.GNALSSLQQ
  446-  461 (27.25/11.12)	TPVGSVQ.QNLVSISQP
  462-  478 (22.77/ 8.13)	TNVNTMStQSGVSMMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      19|      57|      73|      10
---------------------------------------------------------------------------
   57-   73 (15.33/21.75)	LKKIAVrfeeKIYTAAT
   79-   91 (22.09/15.48)	LRKISL....KMLTMET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17951 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPASLDSTAETGHANGA
2) MDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQEL
3) PIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNT
87
1
346
230
57
671










Molecular Recognition Features






MoRF SequenceStartStop




NANANA