<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17950

Description Uncharacterized protein
SequenceMDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSLIGQQNIVGDLQQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMDQRIATKLQQGNWSMQFLILVYVNFAFQHDPLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQAPAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQPLERLIKAANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVCARVVISEHAQQSGGGTFSSKYGSWENCLSAA
Length1186
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.749
Instability index70.36
Isoelectric point9.07
Molecular weight131191.74
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17950
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.70|      27|      28|     348|     374|       1
---------------------------------------------------------------------------
  350-  379 (48.01/12.40)	NLQNLQQQQQLMAQQNNLSSMHQQQlapQS
  436-  460 (36.89/ 7.41)	HSQ..LPQQQLMAQIQSQPGQLQQQ...SN
  801-  826 (36.79/ 7.36)	QRQNLMQNQQMLQQQQQL.HQQAKQ...QL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     293.34|      44|      75|      95|     138|       4
---------------------------------------------------------------------------
   95-  131 (54.93/11.36)	..............NTIPTGNGNKT...LD.PGASHSM.PPQVHNQGQSLPNSLSS
  132-  179 (51.60/10.17)	NQSQARQqlsqnmqNSM.SSNGVQS....S.AGLQSAM..PSVSGLTQTIPNTVGQ
  209-  238 (44.38/ 7.60)	N.SQ.RQ.......................mPGRQQVV.PPQQQQQSQNPQQYLYQ
  239-  275 (43.19/ 7.17)	QQMQ.HQ....llkQKLQQGNH............PHSLvQSHIHQQQQQ..NLLQP
  276-  313 (55.82/11.68)	NQLQSSQ............QSGLQTstvMQ.PSMMQTV.....SGLQQNQPSSVQQ
  700-  739 (43.42/ 7.26)	GDSTSQS....nmmNPIQPGSNLDS.......GQGNAL.SS....LQQTPVGSVQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.23|      30|      30|     871|     900|       6
---------------------------------------------------------------------------
  870-  899 (57.61/22.65)	FPRQHMKPAPSFPI......SSPQLPQHASPQLQHS
  917-  944 (43.37/15.11)	TPLQSAN.SP.FVV......PSPSTPLAPSPMPGDS
  963-  997 (33.24/ 9.76)	QPSVAQAPAPSLAIgtpgisASPLLAEFTSPDGAH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.86|      20|      27|     574|     599|       9
---------------------------------------------------------------------------
  582-  605 (24.02/17.18)	EKLKLFKvmlERLIGFLQ............vPKNNI
  611-  643 (24.83/ 9.91)	EKLGSYE...KQILGFLNpsryrkpipnlqqGQLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.42|      16|      20|    1083|    1102|      10
---------------------------------------------------------------------------
 1085- 1102 (23.96/20.89)	SAqmSPI..QPLRLLVPTNY
 1104- 1121 (23.45/ 6.86)	SC..SPIllDRFPVEVSKEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.22|      14|      20|      16|      33|      11
---------------------------------------------------------------------------
   16-   32 (19.09/22.61)	VMDTgdWRTQLqPDSRQ
   38-   51 (25.12/ 9.75)	IMET..LKRHL.PFSGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.60|      30|      36|     484|     518|      13
---------------------------------------------------------------------------
  486-  518 (45.13/35.64)	QKQLYQ.....PQRALPETSStsLDSTAETGHANGaDW
  519-  553 (48.47/22.41)	QEEIYQkikvmKETYLPEINE..MDQRIATKLQQG.NW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.36|      13|      26|     827|     840|      16
---------------------------------------------------------------------------
  827-  840 (22.39/12.30)	PAQMQTHqIPQPQQ
  855-  867 (24.98/ 9.71)	PAVFQQH.LPTAQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17950 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLYQPQRALPETSSTSLDSTAETGHANGA
2) LTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQ
3) MDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQEL
4) PIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNT
5) QLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSLIGQQNIV
6) QQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQ
487
87
1
632
244
338
516
242
57
957
333
471










Molecular Recognition Features






MoRF SequenceStartStop




NANANA