<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17949

Description Uncharacterized protein
SequenceMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSLVQSHIHHQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNIVGDLQQQQQRLLGQQNNLQNLQQQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPASLDSTAEIGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKVFKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKVNTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLDTGNIVHQPSVAQALAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQDGNSRE
Length860
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.730
Instability index69.54
Isoelectric point9.17
Molecular weight94786.39
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17949
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     741.43|     128|     128|      79|     206|       2
---------------------------------------------------------------------------
   96-  225 (224.25/51.28)	PQARQ.QLSQNM..QNSMSS............N.....GVQSS.AGLQ.....SAM.P.SVSSLTQTIANTVGQNANMQSIS......GVSQNPVGNLMGQGIP....SNM....FVNSQRQMPGRQQVVP.PQQ..QQQSQNPQQY..LYQQQ...IQQQ.llkQKLQQG.NH.....PHSLVQSH
  226-  332 (142.57/29.90)	IHHQQ.Q....Q..QNLLQP............N.....Q.......LQ.....SGL.........QT..STVMQPSMMQTVS......GLQQN.......Q..P....SSV.......QQSTQPMHQQ..H.PQSvlRQQQQQPQQSagIHQQQtpmMQQPllppQQQLMGqQS....NTTNMSQNQ
  358-  488 (123.81/24.99)	QNLQQ.QQQQLMaqQNNLSS............MhqqqlGPQSNvTGLQqqqllGAQ.PaSLDS.TAEIGHANG..ADWQ..E......EIYQK.IKVMKETYLP..eiNEM....Y...QRIATKLQQHDPlPQQ..PKSEQLEKLK..VFKVM...LER..............litfLQVSKNNIT
  489-  561 (117.49/23.34)	PNFKE.KL.....................................GFY.....E..................KQ......IV......GF.LNP..SRYRKPIP.....NL.......QQGQPP..QPRIQ.PMQ..QPQSQVP.......QLQ...SHEN....QLIPQL.QS....M..NTQGSV
  562-  698 (133.31/27.48)	PQMQQnNMSSLL..HNSLSTlsgdstsqsnmmN.....PIQPG.SNLD.....SGQgN.ALSSLQQTPVGSVQQ..NLVSISqptkvnTLSTQSGGSMLQPNIPlqsnSNMiqhqHLKQQQQQQHEQQMLQ.TQQ..LKRFQQHQNL..MQNQQ...MQQQ..........................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17949 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQKLQQGNHPHSLVQSHIHHQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNI
2) LLGQQNNLQNLQQQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLG
3) METKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQ
4) YRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKVNTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLL
208
350
51
511
339
398
196
723










Molecular Recognition Features






MoRF SequenceStartStop




1) RYRKPI
510
515