<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17947

Description Uncharacterized protein
SequenceMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSTNQPQACQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSHVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLTGQQNIVGDLQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSALLPNQGQQSHSQLPQQQLTAQIQSQPGQLQQQSNPLQHDLQQRLQASGSLLQQSNVIDQQKQLYQPQRALPETSSTSLDSTAESGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKVLKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQKNLVSISQPTKVNTLSTQSGASMLQPNIPLQSNSNMIQHQHLKQQQQQHEQQMLQTQQLKRLQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQAPAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQHGNSRE
Length912
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.02
Grand average of hydropathy-0.776
Instability index72.53
Isoelectric point9.08
Molecular weight100031.74
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17947
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     955.15|     126|     126|     126|     251|       1
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   16-  104 (79.49/10.23)	.......................................................................NGNKPLDPGASHsmppqVHNQGQ......SLPIsL...STN..........QPQACQQLSQNMQNSMssngVQS.SAGLQSA.....MP...SVSSLTQT...I....PNTV.GQNANMQSISGV
  126-  251 (235.07/49.84)	QRQ..............MPG...RQQ.VVPP.QQQ...QQS...QNPQQYLYQQQI..QQQL...LKQKLQQGNHPHSHVQSH.....IHQQQQ......QQNL.L...QPN..........QLQSGLQTSTVMQPSM....MQT.VSGLQQN.....QP..SSVQQSTQP...MLQQHPQSVLRQQQQPQQSAGI
  253-  379 (145.29/26.99)	QQQ..............TPM...MQQpLLPP.QQQlmgQQS....NTTN.MSQNQLtgQQNIvgdLQQQLGQQNN....LQ.........NLQQ......QQLM.A...QQN..........NLSSMHQQQ..LGP......QSN.VTGLQQQqllgaQPgnSSM.QSNQHslhMLQQ.PKVTL..QQQAQQSGSA
  384-  469 (120.35/20.64)	Q...............................GQQ...SHS...QLP.....QQQL..TAQ..................IQSQ.....PGQLQQ......QSNP.L...QHD...........LQQRLQAS....GSL....LQQ.SNVIDQQ............KQLYQP.qrALPETSSTSLDSTAESGHANGA
  470-  602 (132.23/23.66)	DWQeeiyqkikvmketyLPEineMYQ.RIAT.KLQ...QHD...PLP.....QQPK..SEQL...EKLKVLK.....VMLERL.....ITFLQV......SKNN.I...TPNfkeklgfyekQIVGFLNPSRYRKP..........IPNLQQG.....QP..P..QPRIQP...M..QQPQSQV.PQLQSHENQLI
  604-  722 (133.81/24.06)	QLQ..............SMN...TQG.SVPQmQQN...NMSsllHNSLSTLSGDST..SQSN...MMNPIQPGSNLDSGQGNA.....LSSLQQtpvgsvQKNL.VsisQPT..........KVNT...LSTQSGASM....LQ...............P..NIPLQSNSN...MIQHQH...LKQQQQQ.....H
  723-  807 (108.91/17.72)	EQQ..............MLQ...TQQ.LKRL.QQH...QNL...MQNQQ.MQQQQL..HQQA...PSPMPGDSDKPVSGISS.....................L.L...NTG..........NI........VHQPSV....AQApAPSLAIG.....TP...GI..SASP...LL....................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17947 with Med15 domain of Kingdom Viridiplantae
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