<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17942

Description Uncharacterized protein
SequenceMAIEKHVKKKVNNLSEGRKCEDEKQPKVNWLQHANALDNISSGRKFLSANFLYSLESQKPMSMRLSSCDVQNPQRLQSSQVEKAWHALSTLQISSRNYIRPGQTGPVKNVSEDLSGNVGQRPTFQSSSNISKYSEGVYAQKNLSGKNSEAAKHTGNVIPADNASHVQSGNNQGWPSDIKASSGVNTNQSNVLAGSFVNHTVQTCQTKEFVETSADYIDDDDLIESIDVDQIVMEHYQATCTPQPAISKFPPITPTADQNSFIRPEEISVPPELCSNCSHGFKLGLCPEAAKHLQEMKDMLIAVSNDLLDNAAELSQAQIDKLRQDRLQLNKQIQQLEKYLRDEERQKSHFSASTLVRNLQYETPQSAACKIDPMRFDAQVHLRNDLNGYEKWNAPSVSFSSIDSFGVSSVPLEREPYIPSFVEVNYIEGSNDPKWSSTNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELCSDYCKYRLLYVTPEKVAKSDVLLRNLESLNGRGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVVQALGLVDCIVFRQSFNRPNLWYSVIPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKTAFYHGNMDAAQRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIIQGQAEQSPWTAGCGRNNMKSSDRILEKNTENLLRMVSYSENDVDCRRLLQLLHFGEKFDAGNCGNTCDNCSKIKTLVERDVTESAKQLVELVKLTGQHFSSSHILEVYRGSLSQFVKRHRHENLSLHGAGKHLAKGEASRILRHLVIEDFLAEDVKKSDFYGSVSSVLKVNESKAHKLCSGGQRIVLRFPSSVKASKQGKSEATPAKGSLMSGKLSPPQAGSPAQPQSEVDLNLSAKLFSALRMLRTALLKEAGDGVMAYHIFGNATLQHMSKRIPRTKEELLEINGIGKAKVSKYGDRVLETIESTIREYNKGDRNSSGSNESSDSIKRRRDASKALNGNMEEEDEFTKSTGRSKKRTATRQNKGSEVHNSMEPVSCNQFLDDDLDFKDSYHDLEADA
Length1194
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.548
Instability index48.92
Isoelectric point7.84
Molecular weight133688.50
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17942
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.85|      28|     208|     785|     830|       2
---------------------------------------------------------------------------
  417-  452 (40.39/15.80)	YIPsfVEVNYIEGsndpkwSSTNFPWTKKLEANNKK
  787-  814 (54.46/55.26)	YIR..VKHMIIQG......QAEQSPWTAGCGRNNMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.44|      28|     138|     454|     482|       3
---------------------------------------------------------------------------
  454-  482 (47.52/32.65)	FGnHSFRPNQRE..VINATMSGYDVFVLMPT
  594-  623 (45.92/26.85)	WG.HDFRPDYKElgILKKKFEKTPVLALTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.35|      36|      36|     135|     170|       4
---------------------------------------------------------------------------
   93-  123 (29.80/15.38)	.........ISSRNYIRPGQTGPVknVSEDLSGN.VgQRPT
  135-  170 (60.17/39.14)	EGVYAQ.KNLSGKNSEAAKHTGNV..IPADNASH.V.QSGN
  172-  202 (35.39/19.75)	QGWPSDiKASSGVNT....NQSNV..LAGSFVNHtV.Q...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.81|      18|      20|     664|     681|       8
---------------------------------------------------------------------------
  664-  681 (34.27/18.71)	CLEDIDKFIKENHFDECG
  685-  702 (33.54/18.17)	CLSRMDCEKVAEKLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.58|      27|      35|    1044|    1070|      11
---------------------------------------------------------------------------
 1044- 1070 (46.10/32.71)	LLKEAGDGVMAYHIFGNATLQHMSKRI
 1077- 1103 (42.48/29.56)	LLEINGIGKAKVSKYGDRVLETIESTI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17942 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IESTIREYNKGDRNSSGSNESSDSIKRRRDASKALNGNMEEEDEFTKSTGRSKKRTATRQNKGSEVHNSMEPVSCNQ
2) RNYIRPGQTGPVKNVSEDLSGNVGQRPTFQS
3) SEAAKHTGNVIPADNASHVQSGNNQGWPSDIKASSGVN
4) SKQGKSEATPAKGSLMSGKLSPPQAGSPAQPQS
1099
96
148
991
1175
126
185
1023










Molecular Recognition Features






MoRF SequenceStartStop




NANANA