<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17940

Description Uncharacterized protein
SequenceMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFVNPSRYRKPIPNLQQGQPPQPHIQPMQQPQSQVPQLQSHENQLNPQLQSMNMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGMLQTQQLKRLQQRQNLMQNQQMLQQQQLHQQAKQQLRAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTGQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSILNTGNIVHQPSVAQAQAPSLAVGTPGISASPLLAEFTSPDGAHGGALTTVSSKSNVTEQPLK
Length395
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.684
Instability index72.38
Isoelectric point9.99
Molecular weight43005.01
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17940
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.50|      20|      20|     170|     189|       1
---------------------------------------------------------------------------
   47-   64 (29.35/ 8.44)	.LQQGQPPQPH.IQPMQQPQ
  170-  189 (32.98/10.61)	MLQTQQLKRLQQRQNLMQNQ
  191-  207 (28.17/ 7.73)	MLQQQQLHQ.QAKQQL..RA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.19|      30|      30|     250|     279|       2
---------------------------------------------------------------------------
  250-  279 (56.15/19.47)	PRQHMKPAPSFPI......SSPQLPQHASPQLQHSS
  297-  324 (45.86/14.70)	PLQSAN.SP.FVV......PSPSTPLAPSPMPGDSD
  343-  376 (30.18/ 7.44)	PSVAQAQAPSLAVgtpgisASPLLAEFTSPDGAH..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.04|      29|      30|      97|     125|       3
---------------------------------------------------------------------------
   72-  112 (31.36/10.86)	..SHENQLNPQLQsmnmqgsvpkmqqnNMSSLLHNSLSTLSGD
  113-  143 (44.92/18.70)	STSQSNMMNPIQP............gsNLDSGQGNALSSLQQT
  146-  169 (33.76/12.25)	GSVQQNLVSISQP..............TNV....NTMSTQSG.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17940 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SRYRKPIPNLQQGQPPQPHIQPMQQPQSQVPQLQSHENQLNPQLQSMNMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGMLQTQQLKRLQQRQNLMQNQQMLQQQQLHQQAKQQLRAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTGQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSILNTGNIVHQPSVAQAQAPSLAVGTPGISASPLLAEFTSPDGAHGGALTTVSSKSNVTEQPLK
38
395










Molecular Recognition Features






MoRF SequenceStartStop




1) FYEKQIVGFVNPSRYRKPIPNL
2) PLLAEFT
26
364
47
370