<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17939

Description Uncharacterized protein
SequenceMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFVNPSRYRKPIPNLQQGQPPQPHIQPMQQPQSQVPQLQSHENQLNPQLQSMNMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMLQPNIPLQSNSNKIQHQHLKQQQQQQQHEQQMLQTQQLKRLQQRQNLMQNQQMLQQQQLHQQAKQQLRAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTGQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSILNTGNIVHQPSVAQAQAPSLAVGTPGISASPLLAEFTSPDGAHGGALTTVSSKSNVTEQPLK
Length429
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.761
Instability index75.69
Isoelectric point9.99
Molecular weight47061.46
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17939
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     280.55|      53|      53|     292|     344|       2
---------------------------------------------------------------------------
   53-   97 (53.70/12.93)	.........PQPHIQPMQQ..PQSQVPQL.QSHenqlNP......QLQSMNMQGSVPK....MQQNN
   99-  149 (64.88/17.38)	SSLLHNSL.STLSGDSTSQ..SNMMNPIQ.PGS....NL......DSGQGNALSSLQQ..TPVGSVQ
  290-  336 (78.49/22.80)	.....PAP..SFPISSPQL..PQHASPQL.QHS....SP......QIDQQNLPSSVTKTGTPLQSAN
  337-  375 (43.67/ 8.93)	SPFVVPSP...........stPLAPSPMP.GDS....DK......PVSG...ISSILNTGNIVH...
  376-  429 (39.82/ 7.40)	QPSVAQAQaPSLAVGTPGI..S..ASPLLaEFT....SPdgahggALTTVSSKSNVTE..QPLK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.38|      17|      22|     209|     230|       3
---------------------------------------------------------------------------
  214-  230 (32.50/18.24)	QQRQNL...MQNQQMLQQQQ
  234-  253 (27.88/ 6.15)	QAKQQLraqMQTHQIPQPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.99|      20|      25|       3|      22|       4
---------------------------------------------------------------------------
    3-   22 (32.76/18.22)	ERLITFLQVSK.NNITPNFKE
   29-   49 (30.23/16.29)	KQIVGFVNPSRyRKPIPNLQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17939 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SRYRKPIPNLQQGQPPQPHIQPMQQPQSQVPQLQSHENQLNPQLQSMNMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMLQPNIPLQSNSNKIQHQHLKQQQQQQQHEQQMLQTQQLKRLQQRQNLMQNQQMLQQQQLHQQAKQQLRAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTGQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSILNTGNIVHQPSVAQAQAPSLAVGTPGISASPLLAEFTSPDGAHGGALTTVSSKSNVTEQPLK
38
429










Molecular Recognition Features






MoRF SequenceStartStop




1) FYEKQIVGFVNPSRYRKPIPNL
2) PLLAEFT
26
398
47
404