<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17938

Description Uncharacterized protein
SequenceMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIVGDLQQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSEQPLERLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTKCRLQARNYITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVR
Length1157
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.839
Instability index73.25
Isoelectric point9.59
Molecular weight128777.19
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17938
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     965.36|     130|     131|     195|     324|       1
---------------------------------------------------------------------------
   87-  195 (116.10/18.35)	NK.....TLdPGAS.....H.SMPPQVH...NQGQS...LPNSL.........SSNQSQA...RQQLS.........Q.......NMQN.........SM...SS....NG.........VQS.S..AGLQSAmpsvsgltqtipnTVGQNANMQ.SISGVSQN......P......VGN...S...MGQ.GI.PPNMFVNSQ...............
  196-  324 (239.01/46.69)	.R.....QM.PGRQ.....Q.VVPPQQQ...QQSQN...PQQYL.........YQQQMQHQLLKQKLQQGNHPHSLVQSH.IHQQQQQN.........LL...QP....NQ.........LQS.SQQSGLQTS.............TVMQPSMMQ.TVSGLQQN.....QP..SS..VQQ...STQPMHQ.QH.PQSVLRQQQQQ......PQQSAGI
  326-  467 (134.35/22.56)	QQ.....QT.PMMQ.....QpLLPPQQQlmgQQSSTtnmSQNQLigqqnivgdLQQQQQQRLLGQQ....NNLQNL.......QQQQQL.........MA...QQ....NN.........LSS.MHQQQLAPQ.............S.........NVTGLQQQqlhgaQPgnSS..MQS...NQHSLHMlQQ.PKVTLQQQAQQsgsgllPNQGQQS
  468-  593 (146.75/25.42)	HS.....QL.PQQQlmaqiQ.SQPGQLQ...QQS.N...P.................LQRD.LQQRLQASG...SLLQQP.NVIDQQKQ.........LY...QP....QRalpetsstsLDS.TAETGHANG.............ADWQEEIYQ.KIKVMKET.....YL..PE..INE.......MYQ.R..IATKLQQHDPL......PQQPKSE
  606-  711 (96.69/13.87)	ERligflQV.P.KN.....N.ITPNFKE...KLGSY...EKQIL..gflnpsrYRKPI......PNLQQGQLP....QPH.I.QPMQQP.........QS...QV....PQ.........LQS.HEN...QLN.............SQLQSINMQgSVPKMQQN.....NM..SS..LLHnslST.................................
  716-  803 (99.25/14.46)	........................STSQ...SNMMN...P...............IQPGSNL...DSGQGNALSSLQQTP.V.GSVQQN.........LVsisQP....TN.........VNTmSTQSGV................SMMQPNM......PL..................Q...SNSNMIQhQH.....LKQQQQH......EQH....
  806-  935 (133.22/22.30)	...........QTQ.....Q.LKRMQQR...QNLMQ...NQQML.........QQQQQLHQQAKQQL.....PAQM.QTHqIPQPQQMNdvnemrqgiGI...KPavfqQH.........LPT.AQRTAFPRQ.............H.MKPAPSF.PISSPQLP.....QH..ASpqLQH...SSPQIDQ.QNlPSSVTK..TGT......PLQS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.17|       8|      16|    1121|    1130|       2
---------------------------------------------------------------------------
 1121- 1130 (10.84/10.95)	QYASAqmSPI
 1140- 1147 (18.34/ 9.60)	NYPSC..SPI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17938 with Med15 domain of Kingdom Viridiplantae
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