<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17937

Description Uncharacterized protein
SequenceMPCPLPPWIQQHPIVCPLKFRIKGCFSLSYCPQISLRHVSSWVSQNMQNCMASNGVQSYAGLQAAPPPVSGVTQTIPNTVVQNPNMQSIPGVSQNSVGNSMGQGIPSTMFANSQRQMPASLDSTAQTGHANGADWQEEIYQKIKVMKKTYFPEINEMYQRIAAKLQQLDSLPQQPKSEQLEKLKVFKAMLECLITFLQVSKNNITPSFKEKLGSYEKQIVSFLKPSRFRRSIPNLQLGQLPQPHVQPMQQPQSPVPQLQSHENQLNPQLQSLNVHGSIPTMQQNNMSSLQHGSLSSLSGVSMSQSITMMRDERF
Length314
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.455
Instability index63.54
Isoelectric point9.42
Molecular weight35059.93
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17937
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.52|      13|      15|     268|     281|       1
---------------------------------------------------------------------------
  268-  281 (19.81/16.56)	QLQSLNvHGSIPTM
  285-  297 (22.71/13.78)	NMSSLQ.HGSLSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.80|      10|      17|      81|      90|       2
---------------------------------------------------------------------------
   81-   90 (20.06/ 9.69)	VQNPNMQSIP
   97-  106 (19.74/ 9.43)	VGNSMGQGIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17937 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNLQLGQLPQPHVQPMQQPQSPVPQLQSHENQLNPQLQSLNVHGSIPTMQQNNMSSLQHGSLS
233
295










Molecular Recognition Features






MoRF SequenceStartStop




NANANA