<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17935

Description Uncharacterized protein
SequenceMDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIVGDLQQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSEQPLERLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTKCRLQARNYITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVCARVVISEHAQQSGGGTFSSKYGSWENCLSAA
Length1241
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.810
Instability index71.87
Isoelectric point9.44
Molecular weight137840.19
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17935
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     952.97|     130|     131|     211|     340|       2
---------------------------------------------------------------------------
   94-  211 (107.80/20.24)	............Q.....N.TIPTGNGNKTLDPGA....................SHSMPPQVHNQGQSlP................NSLSsnQSQ.ARQQLSQN.........MqnsM...SS....NG.........VQS.S..AGLQSAmpsvsgltqtipnTVGQNANMQ.SISGVSQN......P......VGN...S...MGQ.GI.PPNMFVNSQ...............
  212-  340 (237.62/55.86)	.R.....QMPGRQ.....Q.VVPPQQQQQSQNPQQYL.......YQQQ......MQHQLLKQKLQQGNH.P................HSLV..QSH.IHQQQQQN.........L...L...QP....NQ.........LQS.SQQSGLQTS.............TVMQPSMMQ.TVSGLQQN.....QP..SS..VQQ...STQPMHQ.QH.PQSVLRQQQQQ......PQQSAGI
  342-  483 (125.56/25.11)	QQ.....QTPMMQ.....QpLLPPQQQ.........L.......MGQQssttnmSQNQLIGQQNIVGD...lqqqqqqrllgqqnnlQNL.........QQQQQL.........M...A...QQ....NN.........LSS.MHQQQLAPQ.............S.........NVTGLQQQqlhgaQPgnSS..MQS...NQHSLHMlQQ.PKVTLQQQAQQsgsgllPNQGQQS
  484-  609 (146.02/30.72)	HS.....QLPQQQlmaqiQ.SQPGQLQQQS.NP.....................LQRD.LQQRLQASG....................SLL..QQP.NVIDQQKQ.........L...Y...QP....QRalpetsstsLDS.TAETGHANG.............ADWQEEIYQ.KIKVMKET.....YL..PE..INE.......MYQ.R..IATKLQQHDPL......PQQPKSE
  622-  727 (99.51/17.96)	ERligflQVP.KN.....N.ITPNFKEKLGSYEKQILgflnpsrYRKP......I......PNLQQGQL.P......................QPH.I.QPMQQP.........Q...S...QV....PQ.........LQS.HEN...QLN.............SQLQSINMQgSVPKMQQN.....NM..SS..LLHnslST.................................
  732-  819 (100.38/18.20)	.......................STSQSNMMNP.............IQ......PGSNL...DSGQGNA.L................SSLQ..QTP.V.GSVQQN.........L...VsisQP....TN.........VNTmSTQSGV................SMMQPNM......PL..................Q...SNSNMIQhQH.....LKQQQQH......EQH....
  822-  951 (136.08/28.00)	..........QTQ.....Q.LKRMQQRQNLMQNQQML.......QQQQ......QLHQQAKQQL......P................AQM...QTHqIPQPQQMNdvnemrqgiG...I...KPavfqQH.........LPT.AQRTAFPRQ.............H.MKPAPSF.PISSPQLP.....QH..ASpqLQH...SSPQIDQ.QNlPSSVTK..TGT......PLQS...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17935 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSEQPLERL
2) LTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIV
3) MDANNWRPTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQEL
4) QKQLYQPQRALPETSSTSLDSTAETGHANGA
5) QQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQ
661
87
1
534
385
958
381
57
564
519










Molecular Recognition Features






MoRF SequenceStartStop




NANANA