<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17934

Description Uncharacterized protein
SequenceMFYMCRMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIVGDLQQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQASGSLLQQPNVIDQQKQLYQPQRALPETSSTSLDSTAETGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKLFKVMLERLIGFLQVPKNNITPNFKEKLGSYEKQILGFLNPSRYRKPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSEQPLERLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAPGNGSRAAAGEDLVAMTKCRLQARNYITQDGMTGSRKMRRHTSAMPLNVVSSAGSVSDSFKQFTGPETSDLESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDSTAVAATAEGGEGTIVKCSFSAVALSQNLKSQYASAQMSPIQPLRLLVPTNYPSCSPILLDRFPVEVSKEYEDLSIKAKSRFSISLRSLSQPMSLGEIARTWDVCARVVISEHAQQSGGGTFSSKYGSWENCLSAA
Length1209
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.793
Instability index72.90
Isoelectric point9.45
Molecular weight134338.47
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17934
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     964.76|     130|     131|     179|     308|       1
---------------------------------------------------------------------------
   62-  179 (106.85/18.16)	............Q.....N.TIPTGNG...NKTLD...PGA................SHSMPPQVHNQGQSlPNSLSsnQSQ.ARQQLSQN.........MqnsM...SS....NG.........VQS.S..AGLQSAmpsvsgltqtipnTVGQNANMQ.SISGVSQN......P......VGN...S...MGQ.GI.PPNMFVNSQ...............
  180-  308 (238.57/51.35)	.R.....QMPGRQ.....Q.VVPPQQQ...QQSQN...PQQYL.........YQQQMQHQLLKQKLQQGNH.PHSLV..QSH.IHQQQQQN.........L...L...QP....NQ.........LQS.SQQSGLQTS.............TVMQPSMMQ.TVSGLQQN.....QP..SS..VQQ...STQPMHQ.QH.PQSVLRQQQQQ......PQQSAGI
  310-  451 (136.32/25.59)	QQ.....QTPMMQ.....QpLLPPQQQlmgQQSSTtnmSQNQLigqqnivgdLQQQQQQRLLGQQ....NN.LQNL.........QQQQQL.........M...A...QQ....NN.........LSS.MHQQQLAPQ.............S.........NVTGLQQQqlhgaQPgnSS..MQS...NQHSLHMlQQ.PKVTLQQQAQQsgsgllPNQGQQS
  452-  577 (147.33/28.36)	HS.....QLPQQQlmaqiQ.SQPGQLQ...QQS.N...P.................LQRD.LQQRLQASG....SLL..QQP.NVIDQQKQ.........L...Y...QP....QRalpetsstsLDS.TAETGHANG.............ADWQEEIYQ.KIKVMKET.....YL..PE..INE.......MYQ.R..IATKLQQHDPL......PQQPKSE
  590-  695 (98.92/16.16)	ERligflQVP.KN.....N.ITPNFKE...KLGSY...EKQIL..gflnpsrYRKPI......PNLQQGQL.P......QPH.I.QPMQQP.........Q...S...QV....PQ.........LQS.HEN...QLN.............SQLQSINMQgSVPKMQQN.....NM..SS..LLHnslST.................................
  700-  787 (100.61/16.59)	.......................STSQ...SNMMN...P...............IQPGSNL...DSGQGNA.LSSLQ..QTP.V.GSVQQN.........L...VsisQP....TN.........VNTmSTQSGV................SMMQPNM......PL..................Q...SNSNMIQhQH.....LKQQQQH......EQH....
  790-  919 (136.16/25.55)	..........QTQ.....Q.LKRMQQR...QNLMQ...NQQML.........QQQQQLHQQAKQQL......PAQM...QTHqIPQPQQMNdvnemrqgiG...I...KPavfqQH.........LPT.AQRTAFPRQ.............H.MKPAPSF.PISSPQLP.....QH..ASpqLQH...SSPQIDQ.QNlPSSVTK..TGT......PLQS...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17934 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KPIPNLQQGQLPQPHIQPMQQPQSQVPQLQSHENQLNSQLQSINMQGSVPKMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTNVNTMSTQSGVSMMQPNMPLQSNSNMIQHQHLKQQQQHEQHMLQTQQLKRMQQRQNLMQNQQMLQQQQQLHQQAKQQLPAQMQTHQIPQPQQMNDVNEMRQGIGIKPAVFQQHLPTAQRTAFPRQHMKPAPSFPISSPQLPQHASPQLQHSSPQIDQQNLPSSVTKTGTPLQSEQPLERL
2) METKSQNTIPTGNGNKTLDPGASHSMPPQVHNQGQSLPNSLSSNQSQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSGLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPPNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQMQHQLLKQKLQQGNHPHSLVQSHIHQQQQQNLLQPNQLQSSQQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMHQQHPQSVLRQQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSSTTNMSQNQLIGQQNIV
3) QKQLYQPQRALPETSSTSLDSTAETGHANGA
4) QQQQQQRLLGQQNNLQNLQQQQQLMAQQNNLSSMHQQQLAPQSNVTGLQQQQLHGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSGLLPNQGQQSHSQLPQQQLMAQIQSQPGQLQQQSNPLQRDLQQRLQ
629
57
502
353
926
349
532
487










Molecular Recognition Features






MoRF SequenceStartStop




NANANA