<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17931

Description Uncharacterized protein
SequenceMTSSSSIKETTEEEQVTPDILPADGGVGGVEKIEPVSSGGEEESGGEKLDDSMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRKFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHLVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQCPSNLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSTPTNSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGCVQLHWSQWPPSQNNTSPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASASNGVPPSVKPPNWSGFAPLAAYLFSWQEHLMSEAMPGKKHMDKDFTDTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVLHPIFGNPTSGFCGQAPMQTVWVSKVDTSIPPTNDFKNLQAAPAVPISDGRKASDSRSEKTKRVTFDPSDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTLVDNYQINVGSAIAAPAFSSTSCSSASVWHDTRKDRSILKIIRVLPPAGPISQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQLYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVLEPWQASGETLSGIDPEAMTVEPNLVPNIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGAGSNRNTVTSPTQSSASPAPNQGGQSGGTSSTGSTQMQAWVQGAIAKISSTTDGVSTATPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFAGGTQRNPTDTNAQKPQSGAAGKVEEINTVSSKPAPAVVRSDEGQAVRGSQVVPGAKAVEEGPAGRHRVGNGNAGQGYSFEEVTVLFLILMDLCRRTASLGHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDMGSDDTSKLNSTNSLDFSSLENCDVYYGAHGLWPRKRRLSERDAAVGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSALASPGAANPPDQNEREAWWISRWAYGCPMCGGTWVRVV
Length1245
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy-0.193
Instability index45.22
Isoelectric point6.22
Molecular weight134186.93
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17931
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.34|      52|     151|     303|     362|       1
---------------------------------------------------------------------------
  303-  354 (94.44/51.68)	DSGAMHVAGVPIVNPSTVVVWEVTPGPGNGF..QATPMASAS.NGVPPSVKPPNW
  419-  465 (78.70/40.65)	GSGVSAVAFDPTRGGSVIAVVIV.....EGQ..YMSPYDPDE.GPLITGWRVQRW
  475-  507 (41.20/27.10)	HP....................IFGNPTSGFcgQA.PMQTVWvSKVDTSIPPTN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     338.99|      96|     361|     170|     279|       2
---------------------------------------------------------------------------
  170-  276 (163.22/114.29)	RITIWtQPSQCPSNLVRDASCWQR...EHEWRQDIAVVT...KWLSGVSPYrwLSSKSSTPTNSKSAFEEKFLSQHSQTSAR.WPNF......LCVCsvfssgcvQLHWSQWPPSQ.NNTS
  536-  639 (133.80/67.18)	RVTF..DPSDLPSDVRTLARIVYS...AHGGEIAIAFLRggvHIFSG..PN..FTLVDNYQINVGSAIAAPAFSSTSCSSASvWHDTrkdrsiLKII........RVLPPAGPISQvKANS
  640-  680 (41.97/14.08)	..AIW.................ERaiaERFW.WSLLVGV...DWWDAVG.........CT....QSAAEDGIVSLNS............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.12|      92|     114|     758|     871|       3
---------------------------------------------------------------------------
  758-  863 (129.70/131.25)	ASGETLSGidPEA...MTVEPNLVPNIQAyVDAVLDlaSHFITRLRRYASFCRTLASHAVT..AGaGSNRNtvtsPTQSSAS...................PAPNQGGQSGGTSSTGStQMqawVQGAIA
  875-  990 (148.43/88.36)	ATPNPISG..PSSfmpISINTGTFPGTPA.VRLIGD..CHFLHRLCQLLLFCFFFRRTQLPrfAG.GTQRN....PTDTNAQkpqsgaagkveeintvsskPAPAVVRSDEGQAVRGS.QV...VPGAKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.78|      18|     766|     400|     418|       6
---------------------------------------------------------------------------
  401-  418 (32.23/21.72)	SAYVSPEAAA...QSAATTTW
 1206- 1226 (29.55/13.54)	SALASPGAANppdQNEREAWW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17931 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAGSNRNTVTSPTQSSASPAPNQGGQSGGTSSTGSTQ
2) MTSSSSIKETTEEEQVTPDILPADGGVGGVEKIEPVSSGGEEESGGEKLDDSME
817
1
853
54










Molecular Recognition Features






MoRF SequenceStartStop




1) EEEQVTPDIL
12
21