<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17930

Description Uncharacterized protein
SequenceMTSSSSIKETTEEEQVAPDIVPADGGVAGVEKTEPVSSGGEEESGGEKLDDSMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRKYSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHVVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPSNLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSTPTNSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNNTSPKWFRTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMVSASNGVPPSVKPPNWSGFAPLAAYLFSWQEHLMSEAMQGKKHMDKDFADTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVLHPIFGNPTSGFGGQAPMQTVWVSKVDTSIPPTNDFKNLQAAPAVPISDARKASDSGSEKTKRVTFDPSDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTVVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTVLKIIRVLPPAVPSSQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMTVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGAGSNRNTVTSPTQSSASPTPNQGGQSGGTSSTGSTQMQAWVQGAIAKISSTTDGVSTATSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRRTQVPRFAGGTQRNPTDTNAQKLQSGAPGKVEEINSVSSKPAPAAVRSDEGQAVRGSQVVPGAKAVEEGPAGRHRVGSGNAGQGYSSEEVKVLFLILMDLCRRTAALVHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDIGSEDTSKLNSTNSLDFSSLENCDVYYGAHGLWPRKRRLSERDAAVGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSALASPGAANPPDQNEREAWWISRWAYGCPMCGGTWVRVV
Length1246
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy-0.205
Instability index44.94
Isoelectric point6.28
Molecular weight134080.55
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17930
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     471.62|     137|     151|     207|     357|       1
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  213-  353 (235.83/137.95)	P.....YRWLSSKSSTPTNSKSAFEEKF...LSQHSQTSARWPNFLCVCSVFSSG...................SVQlHWSQWPPSQNNTSPKWFRTSKGllGAGPSGIMAADAIIT....DSGAMhVAGVPI.........................................VNPSTVV..VWEVTPGPGNGF..QATPMVSA.SNGVPPSVKPPN
  359-  507 (189.89/100.40)	PlaaylFSWQEHLMSEAMQGKKHMDKDFadtVSLHCSPVSNFSAYVSPEAAAQSA...................AT....TTW...GSGVSAVAFDPTRG..GSVIAVVIVEGQYMSpydpDEGPL.ITGWRV...................................qrwessLQP..VV..LHPIFGNPTSGFggQA.PMQTVwVSKVDTSIPPTN
  661-  781 (45.90/15.22)	.........................................WDAVGCTQSAAEDGivslnsviavldadfhslpSTQ.HRQQYGPS...............................................ldrikcrllegtnaqevramvldmqarllldmlgkgiesalINPSALVpePWQASGETLSGI..DPEAMTVE.PNLV.PSI....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.58|      67|     176|     880|     951|       2
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  576-  605 (24.58/ 9.20)	SGP.NFTVVdnyQINVGSAIAAPAFSSTSCC........................................................................................................................................................................................................................................
  794-  834 (51.16/15.20)	...............................sasvwhdtskdrtvlkiirvlppavpssqvkansaiweraiaerfwwsllvgvdwwdavgctqsaaedgivslnsviavldadfhslpstqhrqqygpsldrikcrllegtnaqevramvldmqarllldmlgkgiesalinpsalvpepwqasgetlsgidpeamtvepnlvpsiqayvdavldlasHFITRLRRYASFC...RTLASHAVTAGaGSNRNTVTSPTQSSAS
  881-  951 (116.84/96.49)	SGPsSFMPI...SINTGTFPGTPAVRLIGDC............................................................................................................................................................................................HFLHRLCQLLLFCfffRRRTQVPRFAG.GTQRNPTDTNAQKLQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.42|      38|     572|     609|     652|       3
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  153-  197 (67.06/32.88)	WSPTSCPRALLianfhgRItIWTQPSQGPSNLVR.DASCWQR...EHEW
  610-  651 (62.36/42.69)	WHDTSKDRTVL......KI.IRVLPPAVPSSQVKaNSAIWERaiaERFW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.44|      24|     761|      92|     117|       4
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   92-  117 (41.41/32.84)	AWCgkLNAIACASETCARIPSSNANP
  856-  879 (42.03/26.27)	AWV..QGAIAKISSTTDGVSTATSNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.73|      36|     572|     512|     547|       5
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  512-  547 (61.34/39.02)	LQAAPAVPISDA.....R..KASDSGSEKTKRVTF.....DPSDLPSD
 1073- 1120 (53.39/32.88)	MQNMPRPRGADAaglllRelELHPPSEEWHRRNMFggpwsDPEDIGSE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17930 with Med16 domain of Kingdom Viridiplantae
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