<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17927
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MGELGQHTVDFSTLVSRAAEESFLSLKELVDKSKSTDQSDSEKKISLLKYLLETQQRMLRLNVLAKWCQQIPLIQYCQQLQSTLSSHDACFIQAADSLFFMHEGLQQARAPIYDVPSAIEVLLTGSYERLPKCIEDVGIHGTLTEDQQKPALRKLDTLVRSKLLEVSLPKEISEVKVFDGTALLRVEGEFKVLVTLGYRGHLSMWRILHMELLVGERSGPVKLEEMRRHALGDDLERRMAAAENPFMILYSVLHELCIALVMDTVLRQVQALRQGRWKDAIRFELISDGSSSSTQQIQDGEADSSGLRTPGLKIVYWLDLDKNSTVSDSGMCPFIKIEPGPDLQITCVHSTFVIDPVNGREAEFSLDQSCIDVEKLLLRAIFCNRYTRLLEIQKELVKNVQIFRVAGDVVLQFLVDEPDVDHKKKETKSDGGELEGQDVLCVRAYGSSFFTLGINIRNGRFLLRSSQNIIMPSVLMDCEEALNQGSITAAEVFISTRSKSILHLFASIGRFLGLEVYENGFSALKVPKNLLTGSTTLLMGFPDYGNSYFLLAQLDKDFKPLFKLLEMQPDSSGKTHSSIDSTHVMRSKKIDVSQMQMLEDELNLSVFDLGKLNHFLQNAADYNQTTEHGLPSEFRLEGHMPIAGCSLLSFSSVVDEVFELEKGASAPSFPLQNVNSSFNASPASHFASVPMNLHSIKARTPSPKWEAGMQVSQVNSMAKVSGVASPYNGSLYPSNNLKGPVHSNSFSSLSSGPGRTTAVKKLSASKSDQDLSSLRSPHSVEVGSNSPMDDDHLRLLNDTSKDAITGIRPSRLSSPSRPTGSRISVSNGKPNGARSSPAGPVRVAGSSPLATTPVSQTAGDTAGFHCFSHDVSIHEKNPRKRTVADMLSLIPALQDLDAKGGFSKRGRTSESAHFQQVSSKMLVSSDMVSKNERYSYGNLIAEANKGNAPSSIYVSALLHVVRHCSLCIKHARLTSQMDELDIPYVEEVGLRNASSNIWFRLPYARGDSWQHICLRLGRPGSMYWDVKINDQHFRDLWELQKGSSSTPWGSGVRIANTSDVDSHIRYDPDGVVLSYQSVESDSIKKLVADIQRLSNARMFALGMRKLLGVKADERQEEISANSDVKVPIGGKNAHEGADKLSELMRRAFRIEAVGLVSLWFSFGSGVLARFVVEWELGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHALAAATRPARGGPAPGAPGAAAAVASMPKQAGYVQSQGLLPSSLMNNISQPTSGSVGNASITTGPLGNHNPHSAAMLAAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKNFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTVGLGNSNNPNPSSVSQLSSVNGNRVNLPSSAAISRAANQVAALNRVGNAVPGSSNLAAVSSGLPIRRSPAAGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVISVKRFHHQQQQQQQQNNTAAQEELTQSEIGEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLVLAQGGEIAPGQKPRIELCLENHTGLNVDENSENSSAAKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYLFGENSNVSFLGMEGSHGGRACWSHADDWEKCKQRVARNVEVNGSSAGEAQGKLKAVADSVQRILQSCLQGLRDGSGVTASSGAT |
Length | 1820 |
Position | Tail |
Organism | Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.178 |
Instability index | 42.67 |
Isoelectric point | 6.98 |
Molecular weight | 197980.91 |
Publications | PubMed=16973872
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central
mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP17927
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.68| 22| 29| 701| 722| 1
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701- 722 (38.50/23.71) PSPKWEAGMQVSQVNSMAKVSG
733- 754 (38.18/23.45) PSNNLKGPVHSNSFSSLSSGPG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 309.36| 89| 184| 1234| 1328| 2
---------------------------------------------------------------------------
1215- 1262 (64.78/29.55) ...................LTAGPL.....HALAA......ATRPARGGP........................................................aPGAP....GA.AAAVASMPKQAGYVQSQ..GLLP
1263- 1388 (125.58/76.68) SSLMNNISQPTSGSVGNASITTGPLGNHnPHSAAM......LAAAGRGGPGI.VPSSLLPIDVSVVLRgpywiriiyrknfavdmrcfagdqvwlqpatppkggPS.VG......GS.LPCPQFRPFIMEHVAQElnGLDP
1396- 1496 (119.01/60.73) TVGLGNSNNPNPSSVSQLSSVNGNRVNL.PSSAAIsraanqVAALNRVGNAVpGSSNLAAVSSGLPIR..................................rsPA.AGVPahvrGElNTAIIGLGDDGGY..GG..GWVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 35.95| 10| 35| 130| 139| 3
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130- 139 (19.05/12.26) LPKCIEDVGI
168- 177 (16.91/10.01) LPKEISEVKV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 95.52| 29| 35| 496| 524| 4
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496- 524 (48.43/27.29) TRSKSILHLFASIG.RFLGLEVYENGFSAL
532- 561 (47.09/26.33) TGSTTLLMGFPDYGnSYFLLAQLDKDFKPL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 134.96| 41| 354| 1158| 1203| 13
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1158- 1203 (68.67/51.80) LW.FSFGSGVLARFVVEWELGKEGCTMHVspDQLWPHTKFledFING
1514- 1555 (66.29/37.15) LWlFAQLPDLLKEILGSILKDNEGALLNL..DQEQPALRF...FVGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.47| 28| 94| 340| 369| 14
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340- 369 (47.28/42.09) GPDlqITCVH...STFVIDPVNGREAEFSLDQS
436- 466 (45.19/32.70) GQD..VLCVRaygSSFFTLGINIRNGRFLLRSS
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