<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17923

Description Uncharacterized protein
SequenceMILFFVSQESYVYTIGKKMNSFGPIKSEASKTTGKSSSGLGQTLIANDVGQSSETNAGTRFSQRLVGNNFVEQNMQPNITFNSRREMLGSQSSDQKLKYQLQQQEFQDGILKDKVQNTSKSFVIQPDILHSQPHQRQQHVTSQNTQNQFSQPPSVRTQYRQTPFAQPSNSPMFQQNQQLGKQRDDSEQLQWSIPQQNVLPSFQQPLGQQRDVSRMQLQQKMAGSQPFIFNAQSHRSSSPMIQQPGVTASEQEVHKITQPGQLHQILGSQKQSGLSQEGIQRKPQTSASFHQQRSIADQQKLFQSQISFAGSSSASLEPKSSGQLTNTADELDEAYQKLQCFKLQYGPQLKKLYIYFKSLLDKATDPELVRKNMKQVIWIEKAMQVFSLQRNQMKNASKEKLETTKDAIVKYVNLFRQKRVASVEQQAELSLPTSGQSQISQPPQSWNGKLQFPLVNLTMTNGLGNSSPTSSMQSRVPNSQPNFVSSLQYSSGMGLEQKNGPSTFQKSARKTGQYFAGSPQNNNFFSNNNVNAFDSPFTHYTRLLQNFEQQMQKQTIQLKKEQMLMRNSQSCVTPAIESTENLHQLQIPSTINQLYSSSPRKSQLSSAQIDQQNFPSASTPLTPTSRYVALTQVDNQTQSQNQSTATDTPGISASPLLEEFTSPSNASDTNQPFQRLLRAVESMSPGVLSAAVQDIDSVVNMVDKIAGGLAEGHSQAAIGEDLVSETRFRVQEMNLAYQQSSIYEREMEQKFSAMTWDTVGQPMHRKSDFDSTTTPKLNNLRIKPNKDLLDEIRRVNQRLVETLVEVDSTDDDSILPESSKGTIIKCSYTAVSLSGDLKSLSSSLTFPVLILRLLVPADYPNTSSVIFDKLPVGCEEPEDLSEKTKLRFSTALRNLSESMSLLEIAKTWDACCRAVLLEFVKPFGGGCLSSRYGKWEDFFTI
Length941
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.650
Instability index55.45
Isoelectric point8.86
Molecular weight105336.87
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     552.93|      83|      85|     142|     224|       1
---------------------------------------------------------------------------
   56-  131 (79.94/31.24)	..NAGTR......FSQ.RLVGNNFV....EQNM.QP.NITFNSR.RE.MLGSQ..SSD.Q.........KLKYQLQ..Q.Q..E....FQD..G....I.LKD....KVQntsksfvIQPDILH.S
  142-  223 (143.25/61.97)	SQNTQNQ......FSQPPSVRTQYR....QTPFAQPSNSPMFQQ.NQ.QLGKQ..RDDSE.........QLQWSIP..Q.Q..NVLPSFQQPLG....Q.QRD..VSRMQ.......LQQKMAG..
  224-  275 (54.61/18.94)	..............SQPFIFNAQ..........SHRSSSPMIQQ.P....GVT..ASEQE.........VHKITQP..G.QlhQILGS...............................QKQSGlS
  276-  375 (56.91/20.06)	QEGIQRKpqtsasFHQQRSIADQQKlfqsQISFAGSSSASLEPK.SSgQLTNT..ADELDeayqklqcfKLQYG.P..QlK..KLYIYFKSLLD....K.ATDpeLVRKN.......MKQ......
  436-  518 (83.45/32.94)	....QSQ......ISQPPQSWNGKL....QFPLV...NLTM....TN.GLGNS..SPTS..........SMQSRVPnsQ.P..NFVSSLQYSSGmgleQ.KNG..PSTFQ..ksarkTGQYFAG.S
  520-  588 (64.01/23.50)	...QNNN......FFSNNNVNA..F....DSPFTHYTR..LLQNfEQ.QMQKQtiQLKKE.........QMLMRNS..Q.S..CVTPAIE........S.TEN..LHQLQ.......IP.......
  589-  631 (41.23/12.45)	..STINQ.....lYSSSPR.KSQL.................................SSA.........Q....ID..Q.Q..N.FPSASTPLT....PtSRY..V................AL.T
  639-  675 (29.51/ 6.76)	SQN.QST......ATDTPGISASPL....LEEFTSPSNAS..DT.NQ.PF..Q..R......................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.22|      17|      25|     709|     728|       4
---------------------------------------------------------------------------
  709-  728 (19.62/25.12)	LAegHSQAAIGEDLVsETRF
  735-  751 (30.59/21.51)	LA..YQQSSIYEREM.EQKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17923 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPSTINQLYSSSPRKSQLSSAQIDQQNFPSASTPLTPTSRYVALTQVDNQTQSQNQSTATDTPGISASPLLEEFTSPSNASDTNQPFQRLLR
2) SFVIQPDILHSQPHQRQQHVTSQNTQNQFSQPPSVRTQYRQTPFAQPSNSPMFQQNQQLGKQRDDSEQLQWSIPQQNVLPSFQQPLGQQRDVSRMQLQQKMAGSQPFIFNAQSHRSSSPMIQQPGVTASEQEVHKITQPGQLHQILGSQKQSGLSQEGIQRKPQTSASFHQQR
587
121
678
293










Molecular Recognition Features






MoRF SequenceStartStop




NANANA