<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17921

Description Uncharacterized protein
SequenceMAISMQNTIWDSVLEITKVAQEKGSDPLIWALQVSSSLSSSGVGLPSPELANVLVSYIFWDNNMPILWKLLEKALALRIVPPLMVLALLSDRVVPCRRSRPVAYRLYMELLKTFAFALKGQINVPNYEMVMKSIDGVLHLSHNFGLEATSPGILVVEFLYSIVSQLLDASLDDEGLLELIPEMKSRWATKPQDMEIDANDNYNQMQTEYHEKLYKMNTIMAIEMIGKFLQDKSTSRILDLVRQNFPTHWIRFFQRLQLLGTNSSALRNSKILTAEDLLQLTTGSGSNIVLSRESKTSSLQKFHSVMAFGSLVSSSGLCQGASHSALWLPLDLALEDAMDGYQVNATSAIEIITGSVKALQAINGTTWHETFLGLWVAALRLVQREREPIEGPIPRLDARLCILLSITTLVVADLIAEDENTPIDESECGSTNHWKEKKLSGKRRIDLVSSLQLLGDYQTLLSPPQSVVSSANQAVAKAMLFVSGINVGSTYSECISMKDLPINCSGNMRHLIVEACIARGLLDTSAYFWPGYVNGCINQIPHSMPAQVPGWSSFMKGVPLSLSMVNALVSSPASSLAELEKIFELAVKGSDDEKISAATVLCGASLLRGWNIQEHTAHFITRLLSPPVPAEYSGSESHLIRYAPILNVLIVGIATVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPDVSWTLPTGEDISAHAVFSNAFALLLKLWRFNHPPLERGVGDVPTVGSQLTPEYLLSVRNSHLVSSGNVLKDQNKRRLSAVATSSSAQPIFLDSFPKLKVWYRQHQKCLAATLSDLVHGTPVHQIVNVLLNMMFRKINRGSQSLTTVTSVSSGSSGPGTDDSTPRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVFMNGTDWPSPAANLSIVEEKIKKILAATGVDVPSLAAGVSSLATIPLPLAAFVSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNNDAVFQLLKSCFSATLGPNAAAISSNGGVGALLGHGFGSHFSGGISPVAPGILYLRVYRSIRDIVSLMEDIISLMMLSVREIACTGLPRERLEKLKRSKNGLRCGQFSLTAAMTRVKLAASLGASLIWLSGGLGLVQALFKETLPSWFIAVHRSEQEEGSKGMVAMLGGYALAFFSVHCGALAWGVDSSSKRRPKVLGVHMEFLASALDGKISLGCDCTTWRAYVSGFVSLMVGCTPSWVLEVDADVLKRLSKGLRQWNEKDLALALLETGGVETMGEAAELIIEDQ
Length1324
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.202
Instability index40.48
Isoelectric point6.55
Molecular weight143897.09
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17921
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     468.94|     149|     161|     950|    1105|       1
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  950- 1105 (242.74/151.68)	DVPSLAA.GVSSLATIPLPLAAFVSLTITYKIDKASERFLNLAGPALE...SLAAGCPW..PCMPIVASLWTQKAKRWFdflvFSASRTVFLHNNDAVFQLLK....SCFSATLGPNAAAI.SSNGGVGALLG.HG..FGSHFSGGISpVAPGILYLRVYrsIRDIVSLM
 1107- 1269 (226.20/125.30)	DIISLMMlSVREIACTGLPRERLEKLKRSKNGLRCGQFSLTAAMTRVKlaaSLGASLIWlsGGLGLVQALFKETLPSWF....IAVHRSEQEEGSKGMVAMLGgyalAFFSVHCGALAWGVdSSSKRRPKVLGvHMefLASALDGKIS.LGCDCTTWRAY..VSGFVSLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.54|      36|      50|     229|     266|       2
---------------------------------------------------------------------------
  229-  266 (53.71/47.06)	LQDKSTSRILdLVRQNfPTHWIRFFQRLQLLGT..NSSAL
  280-  317 (54.82/37.11)	LTTGSGSNIV.LSRES.KTSSLQKFHSVMAFGSlvSSSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.01|      32|     190|     668|     699|       4
---------------------------------------------------------------------------
  668-  699 (60.60/36.16)	VPQLACSLMPICEV.FGSCVPDVSWTLPTG.E....DI
  830-  860 (26.89/11.78)	......SLTTVTSVsSGSSGPGTDDSTPRP.KlpawDI
  864-  892 (41.53/22.36)	VPFVVDAALTACA..HGRLSPR...ELATGlK....DL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.37|      24|      46|      55|      82|       6
---------------------------------------------------------------------------
   55-   82 (33.50/31.75)	VSYIFWdnnMPILwKLLEKALALRIVPP
  102-  125 (41.87/23.79)	VAYRLY...MELL.KTFAFALKGQINVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.59|      46|     354|     371|     420|      11
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  371-  420 (73.42/53.11)	FLGLWvaalRLVQREREPIEGPIPRLDARLC..ILLSI..TTLVVADLIAEDEN
  712-  761 (71.17/43.23)	LLKLW....RFNHPPLERGVGDVPTVGSQLTpeYLLSVrnSHLVSSGNVLKDQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.61|      27|     354|     544|     581|      12
---------------------------------------------------------------------------
  497-  526 (38.36/33.62)	MKDLPINCSgnMRHLIVeACIARGLLDTSA
  555-  581 (43.25/20.03)	MKGVPLSLS..MVNALV.SSPASSLAELEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17921 with Med33 domain of Kingdom Viridiplantae
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