<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17920

Description Uncharacterized protein
SequenceMEQSQRSITAAAASASASSRGHQFHPARAAIIDLFNLYLGRSSRQKPDDSARELPNKTQKRVLALNRELPPPNEQFLLDFEQLHTQFPDQEQLRAVTESVLITLVVQCSNHAPRADFLLFALRSLCSIEYINWDSFLPSLLSSVSTTELSVSQAGQAVPAVSSTGLAQNGMLPSSSTISNSSIFQSLNPTSPLSSVHGIGSPAPLGMEASPSVAMSPVKSSDISGNGPQSSARVNLLIRDSAMSSLRQLCCKIILTGLEFNLKPVTHADIFNHMLSWLVNWDQRQHGVDESDGVKSWRPVKALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRVLSPTIPTVSVEAVANLRYSPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVASCYRPAHGPTPGAVFTSSMICEATIDRIVELLKLTNSEMNCWQEWLVFSDIFYFLVKSGCIDFIDFVDKLVSRLIEGDQHIVRTNHVTWLFAQIIRIELVMNALNTDARKVETTRKVLSFHREDRSSDPNNPQSILLDYISSCQNLRIWSLNTSTRECLNSEQLQKGKQIDEWWRQASKGDRMLDYMNMDDKSIGMFWVVSYTMAQPASETVVNWLSSAGVSELLTGTNMQSNERLMVMREVSPLPMSLLSGLSMNLCLKLVFQMEDSLFAGQVVPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYQSILSKPGVTLLVLEIVNYRLLPLYRYQGKSKTLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSQRDFFSVKREGKGPTEFTETLNRVTIVTLAIIIKTRGIADADHMLYLQTMLEQILATSQHTWSKKTLSYFPPLLRDALIGRIDKRGLAIKAWQQAETTVINQCTQLISLSADPTYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSGHLARVLREFSPEEVTANIYTMVDVLLHNIHVDLQHGHTLQDLLLKTCANLAFFIWTHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQSRVKLFCMNRVRPEHWILSGQFKRLELAKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLLENDAVDPADRVLAMYSPLLEYHPLRFTFVRDILAYFYGHLPGKLVVRILNVLDLSKIPFSESFPQHISSPNPVICPPPEYFATLLLGLVNNVIPPLNTSSKYGSVGDASNNSGRNPHTKTSAASQSGPTNASEGQKAFYQIQDPGTHTQLVLETAVIELLSLPVAASQIIPSLVQIVVNIQPTLIQSSNGAPNCVGQGSVLPTSPSGGSTDSLGGSRSTPSVSGINTSNFVLRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYMEASRIIKECWWLTDSKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIIALLHSFFSNLPQEWLEGTHAIIKHLRPITSVAMLRIAFRIMGPLLPRLANSHTLFNKTLSLLLNTMVDVFGRNSQTSTAVEASEIADLVDFLHHVVHYEGQGGPVQANSKPKAEVLALCGRAAESLRPDLQHLLSHLKPDMNSSIYAATHPKLVQNPP
Length1609
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.036
Instability index44.86
Isoelectric point6.68
Molecular weight179883.95
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1023.94|     300|     513|      51|     388|       1
---------------------------------------------------------------------------
   62-  334 (384.40/295.18)	..........................................................VLALNRE...LPPPNEQ.FLLDFEQlHTQFPDQEQLRAVTESVLITLVVQCSN.......HAPRADFLLfalrslcsiEYINWDSFLPSLLSSVSTTeLSVSQAGQAVPAVSSTGLAQngMLPSSSTISNSS..IFQSLNPTsPL........SSVHGIGS..PAPL....GMEAS.......PSVAMSPVKS.SDISGNGPQSSAR...VNLLIRDSAMSSLRQLCCKIILTGLEFNLKPVTHADIFNHMLSWLVNWDQR.QHGVDESDGVKSWRPVKALI....EWLH......SCLDVIWLLVDEDkcrvPFYELLRSG
  335-  515 (234.45/160.50)	LQFIENIpdDEALFTLI...LEIHRRRDMMAMHMQMLDQHLHCPTFGTH.R........................................................................................................................................................vlsptiptVSVEAVANlrYSPI.......TY.......PSVLGEPLHG.EDLA.....NSIQ........RGS.LDWERALRC......IRHALRTTPSPDWWKRVL..LVASCYRpAHGPTPGAVFTSSMICEATIdrivELLKltnsemNCWQE.WLVFSD.....IFYFLVKSG
  517-  842 (405.09/255.86)	IDFIDFV..DKLVSRLIegdQHIVRTNHVTWLFAQIIRIELVMNALNTDaRkvettrkVLSFHREdrsSDPNNPQsILLDYIS.SCQNLRIWSLNTSTRECLNSEQLQKGKqidewwrQASKGDRML.........DYMNMDDKSIGMFWVVSYT.MAQPASETVVNWLSSAGVSE..LLTGTNMQSNERlmVMREVSPL.PM........SLLSGLSM..NLCLklvfQMEDSlfagqvvPSIAM..VETyCRLLLIAPHSLFRshfSHLAQRYQSILS.KPGVTLLVLEIVNYRLLPLYRYQGKSKTLMYDVT......KIVSTLKGKRGDHRVFRLA....ENL........CMNLI..LSQRD.....FFSVKREG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     236.91|      72|     161|    1196|    1298|       2
---------------------------------------------------------------------------
 1202- 1273 (125.17/113.09)	HISSP.NPVICPPPEYFATLLLGLVNNVIPPLNTSSKYGSVGDASNNSGRNP..HTKTSAASQSGPTNASEGQKA
 1490- 1564 (111.74/52.39)	RIMGPlLPRLANSHTLFNKTLSLLLNTMVDVFGRNSQTSTAVEASEIADLVDflHHVVHYEGQGGPVQANSKPKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17920 with Med23 domain of Kingdom Viridiplantae
Unable to open file!