<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17919

Description Uncharacterized protein
SequenceMFCLVEDLLSFKTSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNNLSQARQVMNSAALSGGTSIGLPSINQTSVAMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGNLHAGVSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGGLQPAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQQQHHQQMQQQQHPQLQQLQHQQQLPQLQQQQQLSQLQQQQQQLSQLQQQQLPQMQQQLPQMHSSYLNCSSSSSSHSFNSSSSNCSSSSSSNCSSSSSSKCSSSSSSSFSKCSSSSKWLEQEWVKLMFKVQVVHN
Length585
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.394
Instability index61.65
Isoelectric point9.33
Molecular weight61767.43
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17919
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.17|      15|      25|     514|     538|       1
---------------------------------------------------------------------------
  519-  538 (23.74/24.49)	CSSSSSShSFnsssSNCSSS
  551-  565 (33.43/ 9.11)	CSSSSSS.SF....SKCSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.29|      16|      26|     446|     470|       2
---------------------------------------------------------------------------
  456-  479 (23.73/13.20)	QQMQQQQHPQLQqlqhqqQlpQLQ
  495-  510 (33.56/11.16)	SQLQQQQLPQMQ......Q..QLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.42|      30|      33|      16|      48|       3
---------------------------------------------------------------------------
   16-   45 (55.11/22.04)	NGS....ITNR.....P.PIS.....VGNLPTATVKVEPSTIT.SM
   47-   80 (36.35/13.69)	NGSafphITSV.....PrPSS.....QG.VPSMQTS.SPSTTTqDM
   93-  130 (27.96/ 8.14)	NVS....VTTQsarsaP.PAAanvniLNNLSQAR.QVMNSAAL.S.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     157.42|      27|      27|     180|     206|       4
---------------------------------------------------------------------------
  180-  206 (46.01/21.98)	GSGNLTGTTQITPN..SGLGSFTSATSNM
  208-  236 (35.52/14.86)	GNSNLGGISQPMGNlhAGVSISQSAMSGL
  245-  265 (35.69/14.97)	GSG.....AQMV.Q..SGMGANPNTMSGL
  267-  291 (40.21/18.04)	ASGVSSGSNTMIPT..PGMSQ..QVQSGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.49|      14|      20|     309|     327|       5
---------------------------------------------------------------------------
  309-  327 (17.32/23.95)	QTAGglQPAqskYVKVWEG
  332-  345 (26.17/15.12)	QRQG..QPV...FITRLEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17919 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGN
2) TNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNN
3) VSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQT
146
20
226
221
116
310










Molecular Recognition Features






MoRF SequenceStartStop




NANANA