<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17918

Description Uncharacterized protein
SequenceMADKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNETSGQKPPTSSAELSLVTFNSHGSYSACLVQRSGWTRDVDIFLHWLSAIPFAGGGFNDAAIAEGLSEALMMFPITPNGNQTQPNTDGQRNCILIAASNPHPLPTPVYRPQIQNLEQTENIDAQNESRLSDAETVAKSFPQCSVSLSVICPKQLPKLRLIYNAGKRNSRAADPPVDNIKNPHFLVLISENFMEARAALSRPGATSLPSNQTPVKVDIASVTSVTGPLPASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNNLSQARQVMNSAALSGGTSIGLPSINQTSVAMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGNLHAGVSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGGLQPAQSKYVKVWEVSLIAFLG
Length590
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.141
Instability index42.89
Isoelectric point7.04
Molecular weight60796.67
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17918
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     191.18|      38|      38|     487|     524|       1
---------------------------------------------------------------------------
  382-  413 (25.12/ 6.42)	...............S.AA....LSG.....GTsiglpsiNQTSV..AMHMSSMISSGM
  414-  444 (33.71/11.55)	........TSSVPAAQ.TV....FSSG....QP.......GVSSI..TGSGN..LTGTT
  445-  475 (38.10/14.18)	QITPN.....SGLGS....ftsaTSNM....PG.......NSN.L..GG.....ISQPM
  476-  511 (47.91/20.04)	G.NLHagvSIS.....qSA....MSGL....GT.......NPNTM..SGSGAQMVQSGM
  512-  547 (46.34/19.10)	GANPN...TMSGLGAS...........gvssGS.......N..TMipTPGMSQQVQSGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.79|      24|      38|     275|     312|       2
---------------------------------------------------------------------------
  265-  292 (33.39/19.18)	PASIPSV.NG.......SItnrP.PISVGnLPTATVK
  295-  327 (29.40/26.22)	PSTITSMaNGsafphitSV...PrPSSQG.VPSMQTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.76|      28|      38|     111|     138|       3
---------------------------------------------------------------------------
  111-  138 (52.83/34.09)	PITPNGNQTQPNTDGQRNCIL.....IAASNPH
  147-  178 (38.57/22.90)	PQIQNLEQTE.NIDAQNESRLsdaetVAKSFPQ
  188-  211 (35.36/20.39)	PKQLPKLRLIYNA.GKRNS.......RAADPP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.91|      27|      30|      52|      80|       4
---------------------------------------------------------------------------
   52-   80 (43.92/37.06)	LSLVTFNSHGSYSACLVQrsGWTRDVDIF
   84-  110 (45.99/31.65)	LSAIPFAGGGFNDAAIAE..GLSEALMMF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17918 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGN
2) PASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNN
3) VSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGG
402
265
482
477
372
569










Molecular Recognition Features






MoRF SequenceStartStop




NANANA