<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17917

Description Uncharacterized protein
SequenceMADKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNETSGQKPPTSSAELSLVTFNSHGSYSACLVQRSGWTRDVDIFLHWLSAIPFAGGGFNDAAIAEGLSEALMMFPITPNGNQTQPNTDGQRNCILIAASNPHPLPTPVYRPQIQNLEQTENIDAQNESRLSDAETVAKSFPQCSVSLSVICPKQLPKLRLIYNAGKRNSRAADPPVDNIKNPHFLVLISENFMEARAALSRPGATSLPSNQTPVKVDIASVTSVTGPLPASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNNLSQARQVMNSAALSGGTSIGLPSINQTSVAMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGNLHAGVSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGGLQPAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQQQHHQQMQQQQHPQLQQLQHQQQLPQLQQQQQLSQLQQQQQQLSQLQQQQLPQMQQHSSSSSSFSKCSSSSKWLEQEWVKLMFKVQVVHN
Length797
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.314
Instability index49.59
Isoelectric point8.87
Molecular weight84762.61
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17917
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      16|      16|     489|     504|       1
---------------------------------------------------------------------------
  480-  499 (20.18/ 6.21)	AGvsiSQSaM..SGLGTNPNTM
  500-  518 (24.82/ 9.47)	SG...SGAqMvqSGMGANPNTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.49|      21|      25|     716|     737|       2
---------------------------------------------------------------------------
  696-  709 (23.48/ 7.16)	...KPQISS...QQQ..QMQQQ
  716-  737 (39.85/21.11)	QQQHPQLQQLQhQQQLPQLQQQ
  744-  764 (44.15/19.56)	QQQQQQLSQLQ.QQQLPQMQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.59|      21|      24|     242|     265|       3
---------------------------------------------------------------------------
  242-  262 (36.89/13.51)	SLPS.NQTPVKVDIA..SVTS..VTG
  293-  315 (26.17/ 9.63)	VEPS.TITSMANGSAfpHITS..VPR
  392-  415 (26.02/ 6.26)	GLPSiNQTSVAMHMS..SMISsgMTS
  416-  436 (32.52/10.60)	SVPA.AQTVFSSGQP..GVSS..ITG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.91|      20|      66|     450|     473|       4
---------------------------------------------------------------------------
  450-  470 (30.64/13.18)	SgLGSFTSATSNMPGNSNLGG
  549-  568 (32.26/ 8.14)	P.LGANNNSAANLPLSQQTAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.52|      52|     168|      21|      74|       5
---------------------------------------------------------------------------
   21-   74 (88.04/58.60)	SIIVSDYLEKIIRCY.CGNETS.GQKPPTSSAE....LSLVTFNSHGSYSAclVQRSGWT
  184-  241 (74.47/43.11)	SVICPKQLPKLRLIYnAGKRNSrAADPPVDNIKnphfLVLISENFMEARAA..LSRPGAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.35|      31|      35|      92|     126|       8
---------------------------------------------------------------------------
   95-  126 (50.75/38.17)	NDAAIAEGLSEAL...MMFPITPNGNQTQpNTDGQ
  128-  161 (50.60/24.69)	NCILIAASNPHPLptpVYRPQIQNLEQTE.NIDAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17917 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGN
2) PASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNN
3) VSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQT
402
265
482
477
372
566










Molecular Recognition Features






MoRF SequenceStartStop




NANANA