<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17916

Description Uncharacterized protein
SequenceMADKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNETSGQKPPTSSAELSLVTFNSHGSYSACLVQRSGWTRDVDIFLHWLSAIPFAGGGFNDAAIAEGLSEALMMFPITPNGNQTQPNTDGQRNCILIAASNPHPLPTPVYRPQIQNLEQTENIDAQNESRLSDAETVAKSFPQCSVSLSVICPKQLPKLRLIYNAGKRNSRAADPPVDNIKNPHFLVLISENFMEARAALSRPGATSLPSNQTPVKVDIASVTSVTGPLPASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNNLSQARQVMNSAALSGGTSIGLPSINQTSVAMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGNLHAGVSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQTAGGLQPAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQQQHHQQMQQQQHPQLQQLQHQQQLPQLQQQQQLSQLQQQQQQLSQLQQHSSSSHSFNSSSSNCSSSSSSNCSSSSSSKCSSSSSSSFSKCSSSSKWLEQEWVKLMFKVQVVHN
Length820
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.319
Instability index51.32
Isoelectric point8.84
Molecular weight86760.42
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17916
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.75|      18|      18|     765|     782|       1
---------------------------------------------------------------------------
  765-  782 (34.90/15.44)	SSSSNCSSSSSSNCSSSS
  784-  801 (34.84/15.40)	SKCSSSSSSSFSKCSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.80|      28|      28|     500|     527|       2
---------------------------------------------------------------------------
  402-  432 (31.79/10.21)	A..MHMSSMISSGMTSSvPaaQTVFSSGQPGVS
  433-  456 (27.15/ 7.66)	SitGSGN..LTGTTQIT.P..N..SGLGS..FT
  457-  483 (38.84/14.09)	S..ATSNMPGNSNLGGI.S..QPMGNLHA.GVS
  500-  527 (55.02/22.99)	S..GSGAQMVQSGMGAN.P..NTMSGLGASGVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.70|      16|      16|     721|     736|       3
---------------------------------------------------------------------------
  702-  718 (26.99/11.19)	QQQQMQqqHHQQ.MQQ.QQ
  721-  736 (33.92/15.88)	QLQQLQ..HQQQ.LPQLQQ
  739-  755 (25.79/10.37)	QLSQLQ..QQQQqLSQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     334.04|      72|      75|     188|     261|       4
---------------------------------------------------------------------------
  125-  184 (54.07/25.86)	.............GQRNCilIAASNP.HPLPT.PVYRPQI...qnleqTENIdaqNESR.....LSDA.........ETVAKS..F.P...QCSV........SLS
  188-  261 (116.89/70.99)	PKQLPKLRLIYNAGKRNS..RAADPPVDNIKN.PHFLVLI........SENF...MEAR.....AALS.........RPGATS..L.PS.NQTPVKVdiASVTSVT
  265-  333 (77.51/40.70)	PASIPSVN.....GSITN..R...PPI.SVGNlPTATVKV........EPST...ITSM.....ANGSafphitsvpRPSSQG..V.PS.MQT......SSPSTTT
  340-  401 (60.50/29.43)	GENAQDLKPNVSVTTQSA..RSAPPAAANVN........I........LNNL...SQARqvmnsAALS...........GGTSigL.PSiNQTSV...........
  534-  580 (25.06/ 6.99)	.............................IPT.PGMSQQVqsgmqplgANNN...SAAN.....LPLS.........QQTAGG..LqPA.QSKYVKV.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.91|      27|      31|      52|      80|       5
---------------------------------------------------------------------------
   52-   80 (43.92/29.27)	LSLVTFNSHGSYSACLVQrsGWTRDVDIF
   84-  110 (45.99/24.99)	LSAIPFAGGGFNDAAIAE..GLSEALMMF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17916 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AMHMSSMISSGMTSSVPAAQTVFSSGQPGVSSITGSGNLTGTTQITPNSGLGSFTSATSNMPGNSNLGGISQPMGN
2) ISSQQQQMQQQHHQQMQQQQHPQLQQLQHQ
3) PASIPSVNGSITNRPPISVGNLPTATVKVEPSTITSMANGSAFPHITSVPRPSSQGVPSMQTSSPSTTTQDMATNGENAQDLKPNVSVTTQSARSAPPAAANVNILNN
4) VSISQSAMSGLGTNPNTMSGSGAQMVQSGMGANPNTMSGLGASGVSSGSNTMIPTPGMSQQVQSGMQPLGANNNSAANLPLSQQT
402
699
265
482
477
728
372
566










Molecular Recognition Features






MoRF SequenceStartStop




NANANA