Description | Uncharacterized protein |
Sequence | MANNPQFSGIQPLQPPLVGPMDPPRNLFPPPPMPVQFRPIVPVQPQQFIPVSSPHFQPVGRGVTVMNAGLPPQPPQPQFPHPMQQLPAIPNQPSHGPPPPPPPQAILLPNAQPNRHVMSGSPLPPHSVQTPNNYMPGLGGLGVPLSSSYTFAPSSHGQPPVTFNAVSQYQPMPQMHAPSIPSGGQPALPSMNQNTALVLPIQHNGEQSSITAANVLATGIQPRPTEEALTEWKEHTSGNGRRFYYNKRTKQSSWEKPFELMTPIERADASTDWKEFTSPDGRKYYFNKVTKQSKWEIPEELKLARARVEKPSIMETQSEVSANSHAPTSVLPSMGKAPSSADALSSTAQGAPSSPVPVKPVAVAGNSQSQLASESSALRVMPSSMTTNADEVQTTESPVAGVPKNAEINATAVNTITAPMSDSFSAHDKPSSEDDAPAQDKQEAEKDVVIDEKVNNVTLEEKSINQDPLLYADKLEAKNAFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKTREEFKKMLEGSKELTASMRWSKVATLFENDERFKAVERERDRRDLIETYLQELEEKERAKAHEERKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLVKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVASGTLTAKTNWRDYHLKVKDLHAYVAVASNASGSTPKDLFEDVSEELQKQYHEDKTWIKDVVKLKKVPLASNWTLQDMKVAIIEDVNSPPISDVNLKMVFDELLERAREKEEKEAKKRKRLADDFLNLLQSIKDITASSKWESFKEIFEGSQEYSSIGEEAFCREMFEEYISQLKEQEKENERKQKEEKAKKEKEREERDWRKAKHRSEKERGHERDKEHTRKEEADVEISDTTETQVCSDKKRSGSDNSSRKQRKRHQNAVDDLDESEKDRSKSSHRHGSNDHKKSRRHGSTPESDSESRHKRHKRDHRNGSRRAGGNEDLEDGEFGAEKKQAQQPPVNLRNQQGYAFQSMI |
Length | 1051 |
Position | Unknown |
Organism | Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus. |
Aromaticity | 0.06 |
Grand average of hydropathy | -1.046 |
Instability index | 62.45 |
Isoelectric point | 6.78 |
Molecular weight | 119586.33 |
Publications | PubMed=16973872 |
Annotated function |
|
GO - Cellular Component | U1 snRNP GO:0005685 IBA:GO_Central U2-type prespliceosome GO:0071004 IBA:GO_Central |
GO - Biological Function | RNA binding GO:0003723 IBA:GO_Central |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro mRNA splicing, via spliceosome GO:0000398 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP17912 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 172.12| 37| 40| 224| 260| 1 --------------------------------------------------------------------------- 185- 216 (30.72/16.34) ..Q..PALPSMNQNTAlvlpiqHNG.........EQSSITAANVL 224- 260 (74.22/50.92) PTE..EALTEWKEHTS......GNGRRFYYNKRTKQSSWEKPFEL 263- 301 (67.18/45.33) PIEraDASTDWKEFTS......PDGRKYYFNKVTKQSKWEIPEEL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 494.05| 65| 67| 547| 611| 2 --------------------------------------------------------------------------- 481- 543 (65.62/43.31) .FKALLE....SANVG....SEWTWD....QAM.RVII.ND.KRYG........AL..........KTL...GERKQAFNEFL.....GQKRKQEAEERRikqKK 547- 611 (105.34/75.06) EFKKMLE...GSKELT....ASMRWS....KVA.TLFE.ND.ERFK........AV..........ERE...RDRRDLIETYLQEL..EEKERAKAHEER...KR 615- 680 (85.24/58.99) EYRQFLE...SCEFIK....ASTQWR....KVQ.DRLE.AD.ERCS........RL..........EK....IDRLEIFQDYLHDLvkEEEEQRKIQKEE...QR 689- 754 (52.94/33.18) EFRKLLEehvASGTLT....AKTNWR..............D.YHLKvkdlhayvAV..........ASNasgSTPKDLFEDVSEEL..QK....QYHED....KT 755- 818 (47.00/28.42) WIKDVVK...LKKVPL....AS.NWTlqdmKVA.IIEDvNS.PPIS........DVnlkmvfdellERA...REK.............EEKE.AK...KR...KR 822- 883 (83.37/57.50) DFLNLLQ...SIKDIT....ASSKWE....SFK.EIFE.GS.QEYS........SI..........GEE...AFCREMFEEYISQL..KEQEK...ENER...KQ 913- 977 (54.55/34.46) E.........RDKEHTrkeeADVEIS....DTTeTQVC.SDkKRSG........SD..........NSS...RKQRKRHQNAVDDL..DESEKDRSKSSH...RH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 137.38| 24| 24| 54| 77| 3 --------------------------------------------------------------------------- 9- 27 (27.98/10.05) G.I..QPLQ..P...P.LVGP..MDPPRNL... 41- 68 (30.00/11.30) ..VPVQPQQfiPvssP.HFQP..VGRGVTVMNA 69- 84 (23.91/ 7.51) G.LPPQPPQ..P.qfP.H..P..MQ........ 99- 120 (28.74/10.52) ...PPPPPQ..AillP.NAQP...NR..HVMSG 121- 148 (26.74/ 9.27) SpLPPHSVQ..T...PnNYMPglGGLGVPLSSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 91.55| 18| 19| 343| 360| 4 --------------------------------------------------------------------------- 343- 360 (29.61/18.57) ALSS.TAQ.G.....APSSPVPVKP 364- 382 (21.34/10.91) AGNS.QSQlA.....SESSALRVMP 384- 406 (17.87/ 7.68) SMTT.NAD.EvqtteSPVAGVPKNA 412- 430 (22.73/12.20) AVNTiTAP.M.....SDSFSAHDKP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.31| 16| 18| 982| 997| 5 --------------------------------------------------------------------------- 982- 997 (27.94/16.19) HKKSRRHGSTPESDSE 1003- 1018 (29.36/17.41) HKRDHRNGSRRAGGNE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.99| 12| 18| 149| 161| 8 --------------------------------------------------------------------------- 149- 161 (19.80/13.86) YTFAPSSHGqPPV 169- 180 (25.19/13.17) YQPMPQMHA.PSI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 36.03| 11| 18| 311| 323| 9 --------------------------------------------------------------------------- 311- 323 (15.27/17.03) PSIMETQSevSAN 332- 342 (20.75/14.29) PSMGKAPS..SAD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EFGAEKK 2) VNLRNQQGYAFQ | 1024 1037 | 1030 1048 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab