<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17912

Description Uncharacterized protein
SequenceMANNPQFSGIQPLQPPLVGPMDPPRNLFPPPPMPVQFRPIVPVQPQQFIPVSSPHFQPVGRGVTVMNAGLPPQPPQPQFPHPMQQLPAIPNQPSHGPPPPPPPQAILLPNAQPNRHVMSGSPLPPHSVQTPNNYMPGLGGLGVPLSSSYTFAPSSHGQPPVTFNAVSQYQPMPQMHAPSIPSGGQPALPSMNQNTALVLPIQHNGEQSSITAANVLATGIQPRPTEEALTEWKEHTSGNGRRFYYNKRTKQSSWEKPFELMTPIERADASTDWKEFTSPDGRKYYFNKVTKQSKWEIPEELKLARARVEKPSIMETQSEVSANSHAPTSVLPSMGKAPSSADALSSTAQGAPSSPVPVKPVAVAGNSQSQLASESSALRVMPSSMTTNADEVQTTESPVAGVPKNAEINATAVNTITAPMSDSFSAHDKPSSEDDAPAQDKQEAEKDVVIDEKVNNVTLEEKSINQDPLLYADKLEAKNAFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKTREEFKKMLEGSKELTASMRWSKVATLFENDERFKAVERERDRRDLIETYLQELEEKERAKAHEERKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLVKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVASGTLTAKTNWRDYHLKVKDLHAYVAVASNASGSTPKDLFEDVSEELQKQYHEDKTWIKDVVKLKKVPLASNWTLQDMKVAIIEDVNSPPISDVNLKMVFDELLERAREKEEKEAKKRKRLADDFLNLLQSIKDITASSKWESFKEIFEGSQEYSSIGEEAFCREMFEEYISQLKEQEKENERKQKEEKAKKEKEREERDWRKAKHRSEKERGHERDKEHTRKEEADVEISDTTETQVCSDKKRSGSDNSSRKQRKRHQNAVDDLDESEKDRSKSSHRHGSNDHKKSRRHGSTPESDSESRHKRHKRDHRNGSRRAGGNEDLEDGEFGAEKKQAQQPPVNLRNQQGYAFQSMI
Length1051
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.046
Instability index62.45
Isoelectric point6.78
Molecular weight119586.33
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17912
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.12|      37|      40|     224|     260|       1
---------------------------------------------------------------------------
  185-  216 (30.72/16.34)	..Q..PALPSMNQNTAlvlpiqHNG.........EQSSITAANVL
  224-  260 (74.22/50.92)	PTE..EALTEWKEHTS......GNGRRFYYNKRTKQSSWEKPFEL
  263-  301 (67.18/45.33)	PIEraDASTDWKEFTS......PDGRKYYFNKVTKQSKWEIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     494.05|      65|      67|     547|     611|       2
---------------------------------------------------------------------------
  481-  543 (65.62/43.31)	.FKALLE....SANVG....SEWTWD....QAM.RVII.ND.KRYG........AL..........KTL...GERKQAFNEFL.....GQKRKQEAEERRikqKK
  547-  611 (105.34/75.06)	EFKKMLE...GSKELT....ASMRWS....KVA.TLFE.ND.ERFK........AV..........ERE...RDRRDLIETYLQEL..EEKERAKAHEER...KR
  615-  680 (85.24/58.99)	EYRQFLE...SCEFIK....ASTQWR....KVQ.DRLE.AD.ERCS........RL..........EK....IDRLEIFQDYLHDLvkEEEEQRKIQKEE...QR
  689-  754 (52.94/33.18)	EFRKLLEehvASGTLT....AKTNWR..............D.YHLKvkdlhayvAV..........ASNasgSTPKDLFEDVSEEL..QK....QYHED....KT
  755-  818 (47.00/28.42)	WIKDVVK...LKKVPL....AS.NWTlqdmKVA.IIEDvNS.PPIS........DVnlkmvfdellERA...REK.............EEKE.AK...KR...KR
  822-  883 (83.37/57.50)	DFLNLLQ...SIKDIT....ASSKWE....SFK.EIFE.GS.QEYS........SI..........GEE...AFCREMFEEYISQL..KEQEK...ENER...KQ
  913-  977 (54.55/34.46)	E.........RDKEHTrkeeADVEIS....DTTeTQVC.SDkKRSG........SD..........NSS...RKQRKRHQNAVDDL..DESEKDRSKSSH...RH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     137.38|      24|      24|      54|      77|       3
---------------------------------------------------------------------------
    9-   27 (27.98/10.05)	G.I..QPLQ..P...P.LVGP..MDPPRNL...
   41-   68 (30.00/11.30)	..VPVQPQQfiPvssP.HFQP..VGRGVTVMNA
   69-   84 (23.91/ 7.51)	G.LPPQPPQ..P.qfP.H..P..MQ........
   99-  120 (28.74/10.52)	...PPPPPQ..AillP.NAQP...NR..HVMSG
  121-  148 (26.74/ 9.27)	SpLPPHSVQ..T...PnNYMPglGGLGVPLSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      91.55|      18|      19|     343|     360|       4
---------------------------------------------------------------------------
  343-  360 (29.61/18.57)	ALSS.TAQ.G.....APSSPVPVKP
  364-  382 (21.34/10.91)	AGNS.QSQlA.....SESSALRVMP
  384-  406 (17.87/ 7.68)	SMTT.NAD.EvqtteSPVAGVPKNA
  412-  430 (22.73/12.20)	AVNTiTAP.M.....SDSFSAHDKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.31|      16|      18|     982|     997|       5
---------------------------------------------------------------------------
  982-  997 (27.94/16.19)	HKKSRRHGSTPESDSE
 1003- 1018 (29.36/17.41)	HKRDHRNGSRRAGGNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.99|      12|      18|     149|     161|       8
---------------------------------------------------------------------------
  149-  161 (19.80/13.86)	YTFAPSSHGqPPV
  169-  180 (25.19/13.17)	YQPMPQMHA.PSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.03|      11|      18|     311|     323|       9
---------------------------------------------------------------------------
  311-  323 (15.27/17.03)	PSIMETQSevSAN
  332-  342 (20.75/14.29)	PSMGKAPS..SAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17912 with Med35 domain of Kingdom Viridiplantae
Unable to open file!