<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17910
Description |
Uncharacterized protein |
Sequence | MANNPQFSGIQPLQPPLVGPMDPPRNLFPPPPMPVQFRPIVPVQPQQFIPVSSPHFQPVGRGVTVMNAGLPPQPPQPQFPHPMQQLPAIPNQPSHGPPPPPPPQAILLPNAQPNRHVMSGSPLPPHSVQTPNNYMPGLGGLGVPLSSSYTFAPSSHGQPPVTFNAVSQYQPMPQMHAPSIPSGGQPALPSMNQNTALVLPIQHNGEQSSITAANVLATGIQPRPTEEALTEWKEHTSGNGRRFYYNKRTKQSSWEKPFELMTPIERADASTDWKEFTSPDGRKYYFNKVTKQSKWEIPEELKLARARVEKPSIMETQSEVSANSHAPTSVLPSMGKAPSSADALSSTAQGAPSSPVPVKPVAVAGNSQSQLASESSALRVMPSSMTTNADEVQTTESPVAGVPKNAEINATAVNTITAPMSDSFSAHDKPSSEDDAPAQDKQEAEKDVVIDEKVNNVTLEEKSINQDPLLYADKLEAKNAFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKTREEFKKMLEGSKELTASMRWSKVATLFENDERFKAVERERDRRDLIETYLQELEEKERAKAHEERKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLVKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVASGTLTAKTNWRDYHLKVKDLHAYVAVASNASGSTPKDLFEDVSEELQKQYHEDKTWIKDVVKLKKVPLASNWTLQDMKVAIIEDVNSPPISDVNLKMVFDELLERAREKEEKEAKKRKRLADDFLNLLQSIKDITASSKWESFKEIFEGSQEYSSIGEEAFCREMFEEYISQLKEQEKENERKQKEEKAKKEKEREERDWRKAKHRSEKERGHERDKEHTRKEEADVEISDTTETQVCSDKKRSGSDNSSRKQRKRHQNAVDDLDESEKDRSKSSHRHGSNDHKKSRRHGSTPESDSESRHKRHKRDHRNGSRRAGGNEDLEDGEFGEDRETR |
Length | 1032 |
Position | Unknown |
Organism | Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -1.059 |
Instability index | 61.57 |
Isoelectric point | 6.53 |
Molecular weight | 117515.91 |
Publications | PubMed=16973872
|
Function
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP17910
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 172.12| 37| 40| 224| 260| 1
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185- 216 (30.72/14.58) ..Q..PALPSMNQNTAlvlpiqHNG.........EQSSITAANVL
224- 260 (74.22/45.59) PTE..EALTEWKEHTS......GNGRRFYYNKRTKQSSWEKPFEL
263- 301 (67.18/40.57) PIEraDASTDWKEFTS......PDGRKYYFNKVTKQSKWEIPEEL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
7| 494.05| 65| 67| 547| 611| 2
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481- 543 (65.62/32.80) .FKALLE....SANVG....SEWTWD....QAM.RVII.ND.KRYG........AL..........KTL...GERKQAFNEFL.....GQKRKQEAEERRikqKK
547- 611 (105.34/57.01) EFKKMLE...GSKELT....ASMRWS....KVA.TLFE.ND.ERFK........AV..........ERE...RDRRDLIETYLQEL..EEKERAKAHEER...KR
615- 680 (85.24/44.76) EYRQFLE...SCEFIK....ASTQWR....KVQ.DRLE.AD.ERCS........RL..........EK....IDRLEIFQDYLHDLvkEEEEQRKIQKEE...QR
689- 754 (52.94/25.07) EFRKLLEehvASGTLT....AKTNWR..............D.YHLKvkdlhayvAV..........ASNasgSTPKDLFEDVSEEL..QK....QYHED....KT
755- 818 (47.00/21.45) WIKDVVK...LKKVPL....AS.NWTlqdmKVA.IIEDvNS.PPIS........DVnlkmvfdellERA...REK.............EEKE.AK...KR...KR
822- 883 (83.37/43.62) DFLNLLQ...SIKDIT....ASSKWE....SFK.EIFE.GS.QEYS........SI..........GEE...AFCREMFEEYISQL..KEQEK...ENER...KQ
913- 977 (54.55/26.05) E.........RDKEHTrkeeADVEIS....DTTeTQVC.SDkKRSG........SD..........NSS...RKQRKRHQNAVDDL..DESEKDRSKSSH...RH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 137.38| 24| 24| 54| 77| 3
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9- 27 (27.98/ 9.24) G.I..QPLQ..P...P.LVGP..MDPPRNL...
41- 68 (30.00/10.38) ..VPVQPQQfiPvssP.HFQP..VGRGVTVMNA
69- 84 (23.91/ 6.92) G.LPPQPPQ..P.qfP.H..P..MQ........
99- 120 (28.74/ 9.67) ...PPPPPQ..AillP.NAQP...NR..HVMSG
121- 148 (26.74/ 8.53) SpLPPHSVQ..T...PnNYMPglGGLGVPLSSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 73.68| 18| 19| 343| 360| 4
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343- 360 (29.61/13.83) ALSS.TAQ.GAPSSPVPVKP
364- 382 (21.34/ 8.00) AGNS.QSQlASESSALRVMP
412- 430 (22.73/ 8.98) AVNTiTAP.MSDSFSAHDKP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.12| 22| 24| 981| 1002| 5
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981- 1002 (40.83/17.84) DHKK.SRRHGSTPE.SDSESRHKR
1006- 1029 (32.29/12.88) DHRNgSRRAGGNEDlEDGEFGEDR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 66.61| 12| 89| 85| 96| 6
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85- 96 (25.11/12.26) QLPAIPNQPSHG
158- 169 (19.97/ 8.36) QPPVTFNAVSQY
174- 184 (21.53/ 9.54) QMHA.PSIPSGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.03| 11| 18| 311| 323| 8
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311- 323 (15.27/13.84) PSIMETQSevSAN
332- 342 (20.75/11.56) PSMGKAPS..SAD
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