<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17909

Description Uncharacterized protein
SequenceMELLHPAHPPHHNPNPKSHSSGLVVGPDRMLSSDQLLDIVEEVSNERVYVAVGNSLEKALSLLNWVFNIFGTRQICLLHVHRPSPLIPTPLGKLPASQANAEVVSAFRREENEQTKKLIDYYLIICSRAKVEATIIIIENDQVHKGIVELVNRHGVRKLVMGAVTENCLKVKKSSSKENYAAKYAPLFCEIWFINKGKHVWTREASENSNPLPKCDHAENMSFETLRSESLRYSKSNLPFQKNNLRSNSAARISCARISSFVQNESVCAESVLPTIYSSYSSWSCHPLQSSSSSCAPGCTSTERRVSSGSDSKLEEESSHSHVEEVRLETEALGNESFEDFLKSKMLEAISKVKIFESAHAHEVKLRKEAEDALNNTIMEQEKLLEEKDEATRKLERTMRNVALLDSRAQEANRRSEEAAGELKLIQTSISSLRQEKQRIRQQKIEAVHWLERWRSHGQAGASNCNGILGITEELPELAEFSLSDLQTATCNFSESFKLGQGGCGCVYKGEMLGRTVAIKRLHPNNTQGQLEFQKEVQVLGKLQHPHLVTLLGACPEAWSLVYEYLPNGSLQDRLFQKNNISPLTWKIRTRIIAEISSTLCFLHSSKPEKIVHGDLKPQNILLNSELSCKICEFGICRLVTEDSLYCPSIHRSNEPKGSFPYTDPEFQRIGVLTPKSDIYAFGVIILQLLTGKPPVGLVGKVRRTLSCGKLASILDPSAGEWPMFVARQLVYLSLQFCELRSRDRPDLTPTLVRELEQLHVSEERPVPSIFLCPILQEIMHDPQVAADGFTYEGEALREWLANGRETSPMTNLRLSHLLLTPNHALRLAIQDWLCQT
Length837
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.348
Instability index49.64
Isoelectric point6.75
Molecular weight94104.40
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17909
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.68|      33|      38|     298|     335|       1
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  301-  335 (51.86/44.56)	STERRVSSG...SDSKLE.EESSHSHveEVRLETE...ALGN
  337-  376 (41.81/21.06)	SFEDFLKSKmleAISKVKiFESAHAH..EVKLRKEaedALNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.35|      65|     207|     222|     299|       2
---------------------------------------------------------------------------
  223-  295 (86.69/83.11)	FETLRSESLrysKSNLpFQKNNLrSNSAARIScARISSFVQNESVCAESVLPTIYsSYSSWSCHPlQSSSSSC
  428-  465 (52.43/26.57)	.................................TSISSLRQEKQRIRQQKIEAVH.WLERWRSHG.QAGASNC
  563-  592 (39.23/15.38)	YEYLPNGSL...QDRL.FQKNNI.SPLTWKIR.TRI.....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.07|      62|     546|     124|     191|       3
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  124-  191 (91.13/93.86)	IICSRAKVEATIIIIENDQVHKGIVELVNRhgVRK.LVMGAVTeNCLKvkkSSSKE..NYAAK...YAPL.FCEI
  672-  740 (87.94/68.74)	VLTPKSDIYAFGVIILQLLTGKPPVGLVGK..VRRtLSCGKLA.SILD...PSAGEwpMFVARqlvYLSLqFCEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17909 with Med32 domain of Kingdom Viridiplantae
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