<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17908

Description Uncharacterized protein
SequenceMAAMEGVMQDQSQLQNQQQQQMVVPERLNHAVQQQLNLESVKTRAISLFKALTRILEDFDAYARTNTTPKWQDILGQYSMVNLELFSIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSLPISSQIEKLKARIDMIAAACEGAEKVLADTRKAYQFGTRQGPTTLPTLDKAQAAKILEQENLLRAAVNGGEGLRVTGDQRQMTSALPVHLVDVLAVSDGMHSFSDSSGMYMKNTPPISNSINNQGSLLQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPLHGQHQMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ
Length550
PositionHead
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.680
Instability index59.87
Isoelectric point9.19
Molecular weight60584.36
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17908
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     519.61|     167|     315|       7|     196|       1
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    7-  190 (248.36/150.74)	VM.....QDQSQLQNQQQQQMVVPERLNHAvQQQLNLESVKtrAisLFKALTRILEDFDAyartNTTPKWQDILGQYSM.....VNLELFsivdEIKKVSKAFVVH...PKNVNAEN..ATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSlPISSQIEKLKARIDMiaaACEGAEKVLADT...RKAYQFGTRQGPTTLP
  316-  500 (271.25/122.64)	MMntpspQQQVQQQQQQQQQQQQRQKILLA.QQQLRQSSLQ..A..LGQNQMSQMHDLQS....QGQQKFQPLHGQHQMqysqpVGHQQF....QSRQLSSGHVQHgmgQSQLNQGNqlNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSS.TMSSQPPVTRMQFGL...AGNNPQRSLASTvlnDQMYNMGVSNPGGMMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      17|      18|     506|     523|       2
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  511-  530 (21.06/13.14)	QGAFGNmQPN.AQNlqSSMAA
  532-  549 (27.41/12.89)	QNASQN.HPNfAQQ..RQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.18|      22|      22|     270|     291|       3
---------------------------------------------------------------------------
  246-  267 (35.78/18.32)	SFSDSSGMYMKNTPPISNSINN
  270-  291 (36.39/18.76)	SLLQPTGTPLHGRSAASPSAAT
  295-  314 (36.02/18.50)	SFDHTTPSPLP..YANSPRSGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17908 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SFSDSSGMYMKNTPPISNSINNQGSLLQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPLHGQHQMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ
246
550










Molecular Recognition Features






MoRF SequenceStartStop




NANANA