<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17907

Description Uncharacterized protein
SequenceMAAMEGVMQDQSQLQNQQQQQMVVPERLNHAVQQQLNLESVKTRAISLFKALTRILEDFDAYARTNTTPKWQDILGQYSMVNLELFSIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSLPISSQIEKLKARIDMIAAACEGAEKVLADTRKAYQFGTRQGPTTLPTLDKAQAAKILEQENLLRAAVNGGEGLRVTGDQRQMTSALPVHLVDVLAVSDGMHSFSDSSGMYMKNTPPISNSINNQGSLLQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ
Length544
PositionHead
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.669
Instability index60.48
Isoelectric point9.19
Molecular weight59883.61
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17907
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     248.51|      63|     316|       7|      79|       1
---------------------------------------------------------------------------
    7-   50 (64.37/17.26)	.......................VMQDQ.........................SQLQNQQ.QQQMVV..PERLNHAV..QQQLNLESVKTRAISLFK
  326-  359 (43.98/ 9.00)	.......................VQQQQ.........................QQQQQQQ.QRQKIL.....L..A...QQQLRQSSLQ..A..LGQ
  360-  423 (92.90/30.43)	NQMSQMHDLQS....QGQQKFQP.MQYS.........................QPVGHQQfQSRQLS..SGHVQHG.mgQSQLNQGNQLNRHLSQFS
  426-  504 (47.26/22.16)	ANTSLFNTGQGapntQMIPNMSS.....tmssqppvtrmqfglagnnpqrslaSTVLNDQ.MYNMGVsnPGGMMPMQ..QQQQQLGS..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.19|      71|     114|     114|     190|       2
---------------------------------------------------------------------------
  114-  190 (107.45/76.12)	LPVMLSSKLLPEMEMDDNSKREhllqGM...QSLPISSQIEKLKARIDMIAAACEG..AEKVLADTrKAYQFgTRQGPTTLP
  230-  305 (115.75/65.18)	LPVHLVDVLAVSDGMHSFSDSS....GMymkNTPPISNSINNQGSLLQPTGTPLHGrsAASPSAAT.SATSF.DHTTPSPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.24|      14|      18|     505|     519|       3
---------------------------------------------------------------------------
  505-  519 (23.02/15.25)	QGAFGNmQPN.AQNLQ
  526-  540 (23.22/10.25)	QNASQN.HPNfAQQRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17907 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SFSDSSGMYMKNTPPISNSINNQGSLLQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ
246
544










Molecular Recognition Features






MoRF SequenceStartStop




NANANA