<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17906

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPFWSIIVSDYLEKIIRCYCGNELLGQKVPTSIVELSIVTFNSHGSYSACLVQRSGWTRDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFPIDPNGSQTQSNIDEQRNCILIAASNPHPLPTPVYRPQIQNLEQIENIDAQNESRLSDAETVAKSFPQCSVSLSIICPKQLPKLRSIYNAGKRNSRAADPPVDSVKNPHFLVLISENFMEARAALSLPGVTSLTSNQTPVKVDIASVTSVTGPAPTSIPSVNGSITNRPTISVGNVPTATVKVEPSTITSMANGPTFPHNPSVPRPASQGVPILQTSSPSTTTQDMATSGDDVQDLKPNVSVMTQSARPGPPAAANVSILNNISQARQVMNSAGLSGGTSLGLPSINQTSVAMHMSNMISSGMASSVPAAPTVFSSGQPGVSSITGSGTLTGTTQIGPNSGLGSFTSATSNVSGNSNLGRISQPMGNLQAGVSIGQSAPGMSQGNISGAQMVQSGMGANPNTMSGLGPSGVSSGLNTMIPTPGMSQQVQSGMQPLGANNNSADNLSMSQQTAGGLQPPQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQMQRQQQQQQMQQQQQQQQHPQLQQQQHQQQLPQLQQQQLSLLQQQQLSLLQQQQQLPQLQQQQMAGTGMGQTYVQGPGRPQLVSQGQVSSQGPANMPGGGFMS
Length805
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.278
Instability index54.73
Isoelectric point8.35
Molecular weight85360.55
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.22|      22|      22|     716|     737|       1
---------------------------------------------------------------------------
  697-  717 (34.06/11.87)	QQQQMQMQRQQQQQQMQQ...qQ....Q
  718-  745 (37.49/13.82)	QQQHPQLQQQQHQQQLPQLQqqQlsllQ
  746-  764 (36.66/13.35)	QQQLSLLQQ...QQQLPQLQ..Q....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.31|      15|      15|     439|     453|       2
---------------------------------------------------------------------------
  439-  453 (27.13/ 9.71)	TLTGTTQIGPNSGLG
  512-  526 (23.18/ 7.12)	TMSGLGPSGVSSGLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.44|      16|      40|     489|     511|       4
---------------------------------------------------------------------------
  489-  511 (25.03/16.74)	PGMSQgnisGaqmVQSGM...GANPN
  532-  550 (28.41/ 7.34)	PGMSQ....Q...VQSGMqplGANNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.57|      26|      43|     314|     340|       7
---------------------------------------------------------------------------
  295-  326 (30.53/10.39)	.PSTIT.SMAngptfphnPSV...................PRPASQGVPILQT
  328-  371 (26.32/ 9.17)	SPSTTTQDMA........TSGddvqdlkpnvsvmtqsarpGPPAAANVSILN.
  372-  398 (34.73/10.51)	NISQARQVMN........SAG..................lSGGTSLGLPSINQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.47|      36|     424|     201|     245|      13
---------------------------------------------------------------------------
  208-  245 (58.02/62.58)	ADPPVDSVKNPH.FLVLISENFMEarAALSLPGVTSLTS
  634-  670 (58.45/38.35)	ADFLVFRAMNQHgFLGQLQEKKLC..AVIQLPSQTLLLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17906 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGMGQTYVQGPGRPQLVSQGQVSSQGPANMPGGGFMS
2) NMISSGMASSVPAAPTVFSSGQPGVSSITGSGTLTGTTQIGPNSGLGSFTSATSNVSGNSNLGRISQPMGNLQAGVSIGQSAPGMSQGNISGAQMVQSGMGANPNTMSGLGPSGVSSGLNTMIPTPGMSQQVQSGMQPLGANNNSADNLSMSQQTAGG
3) QQMQMQRQQQQQQMQQQQQQQQHPQLQQQQHQQ
4) TGPAPTSIPSVNGSITNRPTISVGNVPTATVKVEPSTITSMANGPTFPHNPSVPRPASQGVPILQTSSPSTTTQDMATSGDDVQDLKPNVSVMTQSARPGPPAAANVSILNN
768
407
699
261
805
564
731
372










Molecular Recognition Features






MoRF SequenceStartStop




NANANA