<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17905

Description Uncharacterized protein
SequenceMTSSSSNKETTEEEQTAPEISPAEGGGGASSGGVGKADPVSSGGEEESGGAGEKVDDPMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRQFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHVVIPERPTECAVFNVIADSPRDSVQFIEWSPTSYSRALLIANFHGRTTIWTQPSQGPSNLVRDASCWQREHEWRQDIAVVTKWLSSVSPYRWLSSKSSTPTSSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWSPSQNNTSPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASVGNGVPPSVKPPNWSGFAPLAAYLFNWQEHLMSEVKQGKKQTDEDFTDTITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSVQPVVLHPIFGNPTSGFGGQAPMQTVWVSKVDTSIPPTNDFKNYQPAAAGPISDVRKTSDSGAEKTKRVIFDPSDLPSDVRTLARIVYSAHGGEIAVAFLGGGVHIFSGTNFTLVDNHQINVGSTIAAPAFSSTSCCSASVWHDTSKDHTVLKIIRVLPPAVPSSQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPTSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGRGIESALINPSALVSEPWQASGETLSGIDPEAMTVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSASPAPSQGGQSGSTSSTGSTQMQAWVQGAIAKISSTTDGVTGSTPNPISGPSSVMPISINTGTFPGTPAVRLIGDCHFLRRLCQLLLFCFFFRRTQLPRFAGSAQRNSTDTNVQKPQSGAPGKVEEINTVTSKPAPAMVRSDEGQTARGGQVMPGAKPVEDGPAGRHRVGSGNAGQGYSFEEVKVLFRILMDLCRRTATLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDAEDMGSDDTLKLNSDPLDFSSLENCDVYYSAHGLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAMWKTGLEGVWYKCIRCLRQTSAFASTGAAANPPNQNEREAWWISRWAYGCPMCGGTWVRVV
Length1248
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy-0.225
Instability index44.91
Isoelectric point6.11
Molecular weight134141.31
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17905
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.00|      29|     110|     399|     437|       1
---------------------------------------------------------------------------
  399-  427 (49.06/21.12)	PVSNFSAYVSPEAAAQ.SAATTTWGSGVSA
  508-  536 (41.92/16.02)	PTNDFKNY.QPAAAGPiSDVRKTSDSGAEK
  550-  575 (34.02/29.92)	DVRTL.ARIVYSAHGG.EIAVAFLGGGV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.92|      92|     111|     822|     919|       3
---------------------------------------------------------------------------
  822-  919 (148.80/78.07)	GS.NRNMVTSPTQSSASPAPSQGGQSGSTSSTGSTQMQAWVQGAIAKissTTDGVTGSTPNPiSGPSSVMPI.SINTGTFPGTPAVRLIgdCHFLRRLCQ
  937- 1030 (151.12/66.90)	GSaQRNSTDTNVQKPQSGAPGKVEEINTVTSKPAPAMVRSDEGQTAR...GGQVMPGAKPVE.DGPAGRHRVgSGNAGQGYSFEEVKVL..FRILMDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     351.24|     111|     151|      63|     213|       4
---------------------------------------------------------------------------
   63-  189 (176.98/164.35)	SVSPATVFCIRLKQPRSNlqhKMSVPE.LCRQFSAVA..WCGKLNAIACASETCARI...PSSNANPPFWI.PIHVVIPERPTE.CAVFNVIADSprdSVQFIEWSPtsysrallIANfHGRTTIWtQPSQGPSN
  216-  334 (174.26/121.96)	SVSPYRWLSSKSSTPTSS...KSAFEEkFLSQHSQTSarWPNFLCVCSVFSSGSVQLhwsPSQNNTSPKWFcTSKGLLGAGPSGiMAADAIITDS...GAMHVAGVP........IVN.PSTVVVW.EVTPGPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.40|      16|      18|      22|      39|       6
---------------------------------------------------------------------------
   24-   39 (30.79/14.81)	EGGGGASSGGVGKA..DP
   41-   58 (25.62/ 6.21)	SSGGEEESGGAGEKvdDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.24|      46|     573|     613|     669|       7
---------------------------------------------------------------------------
  613-  669 (66.24/69.05)	WHdTSKDHTVLKIIRVL..PPAVPSSQVKANSAiwERaiAERF.WWsllvgVDWWdAVGC
 1189- 1237 (85.00/50.71)	WK.TGLEGVWYKCIRCLrqTSAFASTGAAANPP..NQ..NEREaWW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.71|      18|     151|     335|     352|       8
---------------------------------------------------------------------------
  335-  352 (34.55/18.03)	GF..QATPMASVG.NGVPPSV
  462-  476 (26.77/12.29)	GW..RVQRWES....SVQPVV
  487-  506 (22.39/ 9.06)	GFggQA.PMQTVWvSKVDTSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.41|      10|      18|     749|     758|       9
---------------------------------------------------------------------------
  749-  758 (18.21/ 9.39)	INPSALVSEP
  769-  778 (19.20/10.29)	IDPEAMTVEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17905 with Med16 domain of Kingdom Viridiplantae
Unable to open file!