<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17900

Description Uncharacterized protein (Fragment)
SequenceAYVDADLDLASHFITRLRCYASFCRTLASHDVTLGTGSNHNMVTSPTQSSASPTPSQGGQSGSASSTGSTQMQAWVQVAIAKISSTTDGVTNSTPNPISGPSSIMPISINTGTFPGTPARNSIDTNVQKPQSGAPGKVEEINIVSSKPAPAMVKSNEGQTARGGQVMPGAKLVEDGPAGRHRVGSGNVDQGYSFEEPTTRGEAHEEQKQRRREGSFGKPAHLRHRLHHQAPASGRLSERK
Length240
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.667
Instability index44.76
Isoelectric point9.43
Molecular weight25224.55
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.56|      15|      17|     116|     130|       2
---------------------------------------------------------------------------
  116-  130 (26.91/18.41)	GTPAR.NSIDTNVQKP
  133-  148 (21.66/13.46)	GAPGKvEEINIVSSKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.95|      15|      19|     164|     180|       3
---------------------------------------------------------------------------
  164-  180 (22.67/17.56)	GQVMPGAKLVEdgPAGR
  186-  200 (28.28/15.05)	GNVDQGYSFEE..PTTR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17900 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LGTGSNHNMVTSPTQSSASPTPSQGGQSGSASSTGSTQ
2) STTDGVTNSTPNPISGPSSIMPISINTGTFPGTPARNSIDTNVQKPQSGAPGKVEEINIVSSKPAPAMVKSNEGQTARGGQVMPGAKLVEDGPAGRHRVGSGNVDQGYSFEEPTTRGEAHEEQKQRRREGSFGKPAHLRHRLHHQAPASGRLSERK
34
85
71
240










Molecular Recognition Features






MoRF SequenceStartStop




1) YSFEEPTTRGEAHEEQKQRRREGSFGKPAHLRHRLHHQAPASGRLSERK
192
240