<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17899

Description Uncharacterized protein
SequenceMTVSSSVWDSVLEHTMSAQVKNSEPHLWAIQLSSSLNSAGVDLPSLELARLLVSHICFDNHVPITWKLLEKALSLNLAPPLLVLALLSTRVVPNRKLHPAAYRLYMELVKRHAFSFSALINAQNYQMTMKSIDDVVHLSQIFGVQLCEPGILLVEFVFSIVWQLLDASLDDEGLLEQSLEKNSRWLSRLQDMEIDGNENFSEKRNEHHEGLHKVNTTMAIELIEEFLKNKVTSSILYLARQNMPSHWGGFIERLQLLVVHSTALRNSKHTTPDAFLQLTSDTHRVLSREGKTISHHEFHAVMFSGSLKSSVGQCHGASHSAVWLPIDLFLEDTMDGSLVTTTSAVENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNTSEGLMPRVDTSLSMLLSITTLVVTNLIEEEESELIDETQQNPANQRKEKQGKLQKGLITSLQLLGDYEGLLTPPQSVSSIANQAAAKATMFISGLTVRNGYSMSINDMPVNCSGNLRHLIVEAFIARNMLDTSAYLWPGYVNARANQVPRGVPSQTTGWSSLMNGSPLTPSMINILVSTPASSLPEVEKIYEIAVNGSGDEKISAAAILCGASFVRGWNIQEHTILFIINLMSPPVPADHSGTESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTGEELSCHAVFSNAFTLLLRLWRFDHSPLDHVLGDIPPVGSHLSPEYLLLVRNSLLASFGPSTRSQLKLRRYSKILSLSVEPVFMDSFPNLKLWYRKHLECIASTFSGLVHGTPVHQIVDALLNLMFRRINRGVQPSTSGSSLSSGPGAEDAQARLKIPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPASMNGTDWPSPAANLSSVEQQIKKILAATGVDVPSLSVGGTLATLPLPLAALVSLTITYKLDKMSERFLTLIGPAVNALAAGCWPCMPIIAALWAQKVKRWSDHLVFSASRTVFHHNSDAVVQLLKSCFSSTLGLSPSHISSNGGVGALLGHGFGPHFSGGISPVAPGILYLRVHRSVRDVMFMAEEILSLLMHSVRDIASSALPKGAMEKLKKSKHGMRYGEVSLAAAMTRVKLAASLGASLVWVSGGLSLVQSLINETLPSWFISVHGSEQEGGESGGMVAMLRGFALAYFAMFCGTFAWGVDSESAASKKRPKVLRTHLEYLASALEGKISLGCDWATAWAYASGFVCLMVACTPKWVLEVDVDVLKRVSKGLRQWNEEELAVALLGLGGVGTMGAAAELIIETGL
Length1317
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.174
Instability index43.57
Isoelectric point6.39
Molecular weight143168.67
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17899
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.93|      24|      36|      28|      63|       1
---------------------------------------------------------------------------
   22-   52 (24.85/25.33)	NSEPhlWAIqLSS..SLNSAGvdlPSLELArLL
   60-   87 (34.08/31.54)	NHVPitWKL.LEKalSLNLAP...PLLVLA.LL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.75|      36|      36|     654|     689|       2
---------------------------------------------------------------------------
  654-  689 (63.68/41.64)	LSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTG
  692-  727 (63.06/41.15)	LSCHAVFSNAFTLLLRLWRFDHSPLDHVLGDIPPVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.90|      18|      31|     778|     795|       3
---------------------------------------------------------------------------
  778-  795 (33.20/21.06)	LKLWYRKHLECIASTFSG
  810-  827 (31.70/19.77)	LNLMFRRINRGVQPSTSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.54|      22|      36|     904|     925|       4
---------------------------------------------------------------------------
  904-  925 (44.67/26.63)	GIWKPA.SMNGT..DWPSPAANLSS
  938-  962 (29.87/15.15)	GVDVPSlSVGGTlaTLPLPLAALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.83|      16|      36|     125|     140|       5
---------------------------------------------------------------------------
  125-  140 (28.82/19.85)	YQMTMKSIDDVVHLSQ
  162-  177 (28.01/19.08)	WQLLDASLDDEGLLEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.19|      31|      31|     520|     550|       6
---------------------------------------------------------------------------
  520-  550 (56.97/40.22)	LWPGYVNARANQVPRGVPSQTTGWSSLMNGS
  552-  582 (50.23/34.46)	LTPSMINILVSTPASSLPEVEKIYEIAVNGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17899 with Med33 domain of Kingdom Viridiplantae
Unable to open file!