<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17898

Description Uncharacterized protein
SequenceMEIDGNENFSEKRNEHHEGLHKVNTTMAIELIEEFLKNKVTSSILYLARQNMPSHWGGFIERLQLLVVHSTALRNSKHTTPDAFLQLTSDTHRVLSREGKTISHHEFHAVMFSGSLKSSVGQCHGASHSAVWLPIDLFLEDTMDGSLVTTTSAVENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNTSEGLMPRVDTSLSMLLSITTLVVTNLIEEEESELIDETQQNPANQRKEKQGKLQKGLITSLQLLGDYEGLLTPPQSVSSIANQAAAKATMFISGLTVRNGYSMSINDMPVNCSGNLRHLIVEAFIARNMLDTSAYLWPGYVNARANQVPRGVPSQTTGWSSLMNGSPLTPSMINILVSTPASSLPEVEKIYEIAVNGSGDEKISAAAILCGASFVRGWNIQEHTILFIINLMSPPVPADHSGTESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTGEELSCHAVFSNAFTLLLRLWRFDHSPLDHVLGDIPPVGSHLSPEYLLLVRNSLLASFGPSTRSQLKLRRYSKILSLSVEPVFMDSFPNLKLWYRKHLECIASTFSGLVHGTPVHQIVDALLNLMFRRINRGVQPSTSGSSLSSGPGAEDAQARLKIPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPASMNGTDWPSPAANLSSVEQQIKKILAATGVDVPSLSVGGTLATLPLPLAALVSLTITYKLDKMSERFLTLIGPAVNALAAGCWPCMPIIAALWAQKVKRWSDHLVFSASRTVFHHNSDAVVQLLKSCFSSTLGLSPSHISSNGGVGALLGHGFGPHFSGGISPVAPGILYLRVHRSVRDVMFMAEEILSLLMHSVRDIASSALPKGAMEKLKKSKHGMRYGEVSLAAAMTRVKLAASLGASLVWVSGGLSLVQSLINETLPSWFISVHGSEQEGGESGGMVAMLRGFALAYFAMFCGTFAWGVDSESAASKKRPKVLRTHLEYLASALEGKISLGCDWATAWAYASGFVCLMVACTPKWVLEVDVDVLKRVSKGLRQWNEEELAVALLGLGGVGTMGAAAELIIETGL
Length1126
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.165
Instability index43.61
Isoelectric point6.56
Molecular weight121670.96
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.66|      51|      58|     991|    1048|       1
---------------------------------------------------------------------------
  995- 1048 (81.11/67.93)	SGG.....MVAMLRGFALAYFAmfCgTFAWGVDSESAASKKRPKVLRT.HLEYLASALEG
 1051- 1107 (79.55/45.70)	SLGcdwatAWAYASGFVCLMVA..C.TPKWVLEVDVDVLKRVSKGLRQwNEEELAVALLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.80|      28|      58|     685|     720|       2
---------------------------------------------------------------------------
  676-  704 (44.48/38.02)	HGRLSPREL........................ATGLkDLADF........LPASLATIVS
  712-  771 (30.32/ 9.42)	RGIWKPASMngtdwpspaanlssveqqikkilaATGV.DVPSLsvggtlatLPLPLAALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.00|      51|      64|     427|     478|       4
---------------------------------------------------------------------------
  427-  462 (52.31/23.53)	.........................PPVPADHSGTESHLINYAPLLN..VLLVGI.....SSVDCV..QI
  463-  532 (59.20/31.88)	LSLHGLVpLLAGALMPiceafgsavPEVSWTLPPTGEELSCHAVFSNafTLLLRLwrfdhSPLDHVlgDI
  539-  572 (42.50/18.05)	LSPEYLL.LVRNSLLA.........SFGPSTRS..QLKLRRYSKIL........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.04|      24|      63|     573|     596|       5
---------------------------------------------------------------------------
  573-  596 (43.34/31.43)	SLSVEPVFMDSFPNLKLWYRKHLE
  608-  625 (23.34/13.02)	GTPVHQI.VDAL..LNLMFRR...
  638-  661 (39.36/27.77)	SLSSGPGAEDAQARLKIPAWDILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      15|      58|     906|     922|       7
---------------------------------------------------------------------------
  887-  902 (23.88/ 9.46)	LYLRVHrSVRDVMFMA
  906-  920 (25.95/18.89)	LSLLMH.SVRDIASSA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17898 with Med33 domain of Kingdom Viridiplantae
Unable to open file!