<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17896

Description Uncharacterized protein
SequenceMASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPIQQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPPLSNHMHVVGTSGVPNSSPYAFAPSSFGLTQNSASALPQFPPMSQMHAHVVPMGGQPWLSSGSHGASLVPPVQPTVVQPSISSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERADASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGVQPSVTPLPTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVFANKLEAKNAFKALLESANVQSDWTWEQTMREIINDKRYAALKTLGERKQAFNEYLGQRKKLEAEERRVRQKKAREEFAKMLEESKELTSSMKWSKAISLFENDERYKALERARDREDLFDSYIVDLERKEKEKAAEDRRRNVAEYRKFLESCDFIKASSQWRKIQDRLEDDERCLCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDEFRKLLEEHVASGSLTAKTHWLDYCLKVKDLPQYQAVATNTSGSKPKDLFEDVSEELEKQYHDDKTRIKDAMKLGKITMVSTWTFEDFKGAVADDIGSPPISDINLKLLYEELVERAKEKEEKEAKKQQRLADDFTKLLYTLKEVTPSSNWEDCKPLFEESQEYRSIGEESLSKEIFEEYVTHLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNETDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDGELGDDVEIR
Length1009
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.050
Instability index54.51
Isoelectric point6.48
Molecular weight114250.81
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17896
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     136.32|      21|      21|       6|      26|       1
---------------------------------------------------------------------------
    6-   24 (34.73/21.66)	..QS.SGGQFRPM.......V.........PTQQG...QPF
   25-   40 (17.83/ 6.99)	IQ..vASQQFRPV...................GQG...MP.
   41-   66 (17.97/ 7.11)	..SS.HVGM..PA.......AqsqhlqfsqPIQQL...PPW
  115-  130 (17.22/ 6.46)	..NS.SPYAF..........A.........PSSFG...LTQ
  131-  157 (31.19/18.59)	NSAS.ALPQFPPMsqmhahvV.........P.MGG...QPW
  159-  179 (17.39/ 6.61)	...S.SGSHGASL.......V.........PPVQPtvvQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.61|      37|      38|     201|     237|       2
---------------------------------------------------------------------------
  201-  237 (74.27/46.44)	WQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERAD
  242-  278 (71.34/44.32)	WKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     513.45|      64|      65|     512|     575|       3
---------------------------------------------------------------------------
  432-  507 (68.35/40.00)	EKTPDEEplvFANKLEaknafkallE...SANVQSDWT.........W..............EQTMREIINDKRYAAL...KTLGERK......QAFNEY.LG..QRKklEAEE
  512-  575 (104.63/65.61)	QKKAREE...FAKMLE.........E...SKELTSSMK.........W..............SKAISLFENDERYKAL...ERARDRE......DLFDSY.IVDLERK..EKEK
  580-  642 (88.73/54.39)	RRRNVAE...YRKFLE.........S...CDFIKASSQ.........W..............RKIQDRLEDDERCLCL...EKL.DRL......LIFQDY.IRDLEKE..EEEQ
  654-  718 (74.07/44.04)	ERKNRDE...FRKLLE.........EhvaSGSLTAKTH.........W..............LDYCLKVKDLPQYQAVatnTSGSKPK......DLFE.....DV.SE..ELEK
  722-  782 (25.55/ 9.78)	DDKTR...........................IKDAMKlgkitmvstWtfedfkgavaddigSPPISDINLKLLYEEL..vERAKEKE........................EK
  787-  850 (85.06/51.79)	QQRLADD...FTKLLY.........T...LKEVTPSSN.........W..............EDCKPLFEESQEYRSI...GEESLSK......EIFEEY.VTHLQEK..AKEK
  856-  924 (67.06/39.09)	EEKARKE.....KERE.........E...KDKRKEKER.........K..............EKEKEKEKEREREKGK...QRTKKNEtdgenvDASDGYgHKDDKKR..EKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.67|      25|      25|     949|     973|       4
---------------------------------------------------------------------------
  949-  973 (43.35/24.96)	SKKSRKHSSDRKKSRKHTYTPE.SDG
  975- 1000 (39.32/21.92)	SQHKRHKRDHRDGSRRNGSNEElEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.77|      21|      25|     301|     321|       5
---------------------------------------------------------------------------
  301-  321 (35.39/20.28)	VTSSETSTTAVS.....VSSSSVMLP
  323-  348 (27.14/13.97)	VSSSPISVTAVAnpppvVVSGSPALP
  349-  368 (32.25/17.88)	VAHS.TTASAVG.....VQPSVTPLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17896 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHSTTASAVGVQPSVTPLPTAVSVGTGAPAA
2) HLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNETDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDGELGDDVEIR
3) LSSGSHGASLVPPVQPTVVQPSISSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYN
4) MASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPIQQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPPLSNHMHVVGTSGVP
5) MDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVF
6) SIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETS
350
842
158
1
410
265
380
1009
215
114
442
307










Molecular Recognition Features






MoRF SequenceStartStop




1) SAIDDV
934
939