<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17895

Description Uncharacterized protein
SequenceMASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPIQQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPPLSNHMHVVGTSGVPNSSPYAFAPSSFGLTQNSASALPQFPPMSQMHAHVVPMGGQPWLSSGSHGASLVPPVQPTVVQPSISSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERADASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGVQPSVTPLPTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASMMDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVFANKLEAKNAFKALLESANVQSDWTWEQTMREIINDKRYAALKTLGERKQAFNEYLGQRKKLEAEERRVRQKKAREEFAKMLEESKELTSSMKWSKAISLFENDERYKALERARDREDLFDSYIVDLERKEKEKAAEDRRRNVAEYRKFLESCDFIKASSQWRKIQDRLEDDERCLCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDEFRKLLEEHVASGSLTAKTHWLDYCLKVKDLPQYQAVATNTSGSKPKDLFEDVSEELEKQYHDDKTRIKDAMKLGKITMVSTWTFEDFKGAVADDIGSPPISDINLKLLYEELVERAKEKEEKEAKKQQRLADDFTKLLYTLKEVTPSSNWEDCKPLFEESQEYRSIGEESLSKEIFEEYVTHLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNETDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDGELGDDVEIRKQHMAAEFDI
Length1019
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.045
Instability index54.55
Isoelectric point6.42
Molecular weight115422.13
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17895
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     513.45|      64|      65|     512|     575|       1
---------------------------------------------------------------------------
  432-  507 (68.35/41.48)	EKTPDEEplvFANKLEaknafkallE...SANVQSDWT.........W..............EQTMREIINDKRYAAL...KTLGERK......QAFNEY.LG..QRKklEAEE
  512-  575 (104.63/68.05)	QKKAREE...FAKMLE.........E...SKELTSSMK.........W..............SKAISLFENDERYKAL...ERARDRE......DLFDSY.IVDLERK..EKEK
  580-  642 (88.73/56.41)	RRRNVAE...YRKFLE.........S...CDFIKASSQ.........W..............RKIQDRLEDDERCLCL...EKL.DRL......LIFQDY.IRDLEKE..EEEQ
  654-  718 (74.07/45.67)	ERKNRDE...FRKLLE.........EhvaSGSLTAKTH.........W..............LDYCLKVKDLPQYQAVatnTSGSKPK......DLFE.....DV.SE..ELEK
  722-  782 (25.55/10.14)	DDKTR...........................IKDAMKlgkitmvstWtfedfkgavaddigSPPISDINLKLLYEEL..vERAKEKE........................EK
  787-  850 (85.06/53.72)	QQRLADD...FTKLLY.........T...LKEVTPSSN.........W..............EDCKPLFEESQEYRSI...GEESLSK......EIFEEY.VTHLQEK..AKEK
  856-  924 (67.06/40.53)	EEKARKE.....KERE.........E...KDKRKEKER.........K..............EKEKEKEKEREREKGK...QRTKKNEtdgenvDASDGYgHKDDKKR..EKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.85|      25|      25|      26|      50|       2
---------------------------------------------------------------------------
   26-   49 (43.34/21.08)	................QVASQQFRP.VG.Q.GMPSSH.VGMPAA
   50-   83 (23.89/ 8.68)	Q........sqhlqfsQ.PIQQLPPwPN.QpGAPSAQaLSMPYG
   84-  123 (22.62/ 7.87)	QlnrpltssqpqqnapPL.SNHMHV.VGtS.GVPNSS.PYAFAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.14|      25|      25|     949|     973|       3
---------------------------------------------------------------------------
  949-  973 (42.76/20.41)	SKKSRKHSSDRKKSRKHTYTPE.SDG
  975- 1000 (39.38/18.27)	SQHKRHKRDHRDGSRRNGSNEElEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.61|      37|      40|     201|     237|       4
---------------------------------------------------------------------------
  201-  237 (74.27/41.54)	WQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERAD
  242-  278 (71.34/39.64)	WKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.16|      18|      19|     342|     360|       5
---------------------------------------------------------------------------
  330-  348 (24.75/20.27)	VTAVANPPPVVV..SGSPaLP
  349-  368 (25.41/15.85)	VAHSTTASAVGVqpSVTP.LP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.74|      25|     132|       1|      25|       6
---------------------------------------------------------------------------
    1-   25 (50.59/23.88)	MASNPQSSGGQFRPM.......VPTQQG...QPFI
  128-  157 (34.93/14.60)	LTQNSASALPQFPPMsqmhahvVP.MGG...QPW.
  159-  180 (23.23/ 7.67)	......SSGSHGASL.......VPPVQPtvvQPSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17895 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHSTTASAVGVQPSVTPLPTAVSVGTGAPAA
2) HLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNETDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDGELGDDVEIRKQHMAAEFDI
3) LSSGSHGASLVPPVQPTVVQPSISSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYN
4) MASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPIQQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPPLSNHMHVVGTSGVP
5) MDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVF
6) SIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVAVTSSETS
350
842
158
1
410
265
380
1019
215
114
442
307










Molecular Recognition Features






MoRF SequenceStartStop




1) DDVEIRKQHMAAEF
1004
1017